Variant report

Variant	rs2389910
Chromosome Location	chr13:98117164-98117165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1041270	0.86[ASN][1000 genomes]
rs1159278	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11616843	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12873919	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs1304392	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1467693	0.87[ASN][1000 genomes]
rs2389908	1.00[YRI][hapmap]
rs2389909	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7322222	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7328713	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9513245	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516938	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516953	0.84[AMR][1000 genomes]
rs9554396	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9634445	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98087400-98122200	Weak transcription	Gastric	stomach
2	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
3	chr13:98088600-98119600	Weak transcription	NH-A	brain
4	chr13:98088800-98118000	Weak transcription	HMEC	breast
5	chr13:98088800-98118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:98088800-98119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:98089800-98122800	Weak transcription	Small Intestine	intestine
9	chr13:98091800-98123000	Weak transcription	HSMM	muscle
10	chr13:98101200-98117400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:98101400-98123400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:98102200-98126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:98106000-98119200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr13:98106000-98124200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr13:98108600-98118000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:98108600-98134600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:98112000-98126600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:98112200-98125000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:98112600-98118200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:98112600-98119400	Weak transcription	Colon Smooth Muscle	Colon
21	chr13:98112800-98119600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr13:98113200-98119000	Weak transcription	NHLF	lung
23	chr13:98113200-98120400	Weak transcription	Fetal Brain Male	brain
24	chr13:98113200-98120800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:98113200-98124200	Weak transcription	Spleen	Spleen
26	chr13:98113400-98127200	Weak transcription	Right Atrium	heart
27	chr13:98113600-98117400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr13:98113600-98118400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr13:98113600-98118600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr13:98113800-98118800	Weak transcription	Fetal Heart	heart
31	chr13:98114000-98117400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr13:98114000-98119400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr13:98115200-98117600	Strong transcription	Fetal Lung	lung
34	chr13:98115200-98118800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr13:98115600-98119200	Weak transcription	HepG2	liver
36	chr13:98115800-98117400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr13:98115800-98118200	Strong transcription	Dnd41	blood
38	chr13:98116000-98118200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr13:98116200-98117600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr13:98116200-98117600	Strong transcription	Fetal Kidney	kidney
41	chr13:98116200-98117600	Strong transcription	Placenta	Placenta
42	chr13:98116200-98117800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr13:98116200-98117800	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr13:98116200-98117800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr13:98116200-98118000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr13:98116200-98118200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr13:98116200-98118200	Strong transcription	Fetal Intestine Large	intestine
48	chr13:98116200-98118200	Strong transcription	Fetal Muscle Trunk	muscle
49	chr13:98116200-98118200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr13:98116200-98118800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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