Variant report

Variant	rs1467693
Chromosome Location	chr13:98129710-98129711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1041270	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1159278	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11616843	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1304392	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2389909	0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2389910	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs7322222	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7328713	0.82[ASN][1000 genomes]
rs9300410	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs9513245	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9516938	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9554396	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634445	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98108600-98134600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:98117000-98130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:98117000-98130000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr13:98117800-98130200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:98120800-98130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:98127400-98130600	Weak transcription	Aorta	Aorta
7	chr13:98127400-98132000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:98127400-98132000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:98127600-98131400	Weak transcription	NHDF-Ad	bronchial
10	chr13:98128200-98131400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:98128200-98136200	Weak transcription	Fetal Lung	lung
12	chr13:98129000-98130400	Enhancers	Rectal Smooth Muscle	rectum
13	chr13:98129600-98130600	Weak transcription	Fetal Heart	heart
14	chr13:98129600-98131000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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