Variant report

Variant	rs7322222
Chromosome Location	chr13:98135161-98135162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1041270	0.96[ASN][1000 genomes]
rs1159278	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[MEX][hapmap]
rs11616843	0.85[ASN][1000 genomes]
rs1304392	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1467693	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2389909	0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2389910	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2769280	0.80[AMR][1000 genomes]
rs2769283	0.81[AMR][1000 genomes]
rs9300410	0.81[MEX][hapmap]
rs9513245	0.92[ASN][1000 genomes]
rs9516938	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9516953	0.82[ASN][1000 genomes]
rs9554396	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs9634445	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7322222	SERPINB10	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98128200-98136200	Weak transcription	Fetal Lung	lung
2	chr13:98132200-98135600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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