Variant report

Variant	rs2769280
Chromosome Location	chr13:98190168-98190169
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98183881..98186463-chr13:98188415..98190333,2	K562	blood:
2	chr13:98188110..98190023-chr13:98190085..98192332,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10851073	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1159278	0.86[CHB][hapmap]
rs12869921	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12870589	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1304392	0.86[CHB][hapmap]
rs173241	0.90[EUR][1000 genomes]
rs184729	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs184731	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1854225	0.84[ASN][1000 genomes]
rs1854227	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1887561	0.94[ASN][1000 genomes]
rs2094474	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2389861	0.83[ASN][1000 genomes]
rs2389909	0.81[CHB][hapmap]
rs2389910	0.86[CHB][hapmap]
rs2769283	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2770220	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2770229	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4346086	0.97[ASN][1000 genomes]
rs4400904	0.93[ASN][1000 genomes]
rs4534691	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4771275	0.85[ASN][1000 genomes]
rs4771276	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4772004	0.84[ASN][1000 genomes]
rs7139828	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322222	0.86[CHB][hapmap];0.81[MEX][hapmap];0.80[AMR][1000 genomes]
rs7338682	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs787467	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7981655	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7982432	0.84[ASN][1000 genomes]
rs812010	0.84[AMR][1000 genomes]
rs9300410	0.81[MEX][hapmap]
rs9300422	0.88[ASN][1000 genomes]
rs9513256	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516959	0.94[ASN][1000 genomes]
rs9516961	0.83[ASN][1000 genomes]
rs9516962	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516963	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516967	0.84[ASN][1000 genomes]
rs9516974	0.85[ASN][1000 genomes]
rs9516977	0.83[ASN][1000 genomes]
rs9516978	0.83[ASN][1000 genomes]
rs9554396	0.86[CHB][hapmap]
rs9556742	0.82[AMR][1000 genomes]
rs9556743	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9556744	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9556745	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9556748	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9556751	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9556752	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9556759	0.85[ASN][1000 genomes]
rs9556760	0.85[ASN][1000 genomes]
rs9556761	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9556762	0.85[ASN][1000 genomes]
rs9584602	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9584604	0.83[ASN][1000 genomes]
rs9634497	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98186000-98190400	Weak transcription	Lung	lung
2	chr13:98188400-98191800	Weak transcription	NHDF-Ad	bronchial
3	chr13:98188400-98192800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:98188600-98190400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:98188600-98191800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:98189000-98191400	Enhancers	GM12878-XiMat	blood

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