Variant report

Variant	rs9556742
Chromosome Location	chr13:98220852-98220853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1410267	0.80[EUR][1000 genomes]
rs184729	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs184731	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1854225	0.81[EUR][1000 genomes]
rs1854227	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1887561	0.82[EUR][1000 genomes]
rs2094474	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2389861	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2769280	0.82[AMR][1000 genomes]
rs2770220	0.86[AMR][1000 genomes]
rs2770229	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4346086	0.80[EUR][1000 genomes]
rs4400904	0.84[EUR][1000 genomes]
rs4534691	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4771275	0.82[EUR][1000 genomes]
rs4771276	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7139828	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7338682	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs787467	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7981655	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7982432	0.82[EUR][1000 genomes]
rs812010	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9300422	0.83[EUR][1000 genomes]
rs9516959	0.82[EUR][1000 genomes]
rs9516967	0.82[EUR][1000 genomes]
rs9556743	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9556744	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9556745	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9556759	0.81[EUR][1000 genomes]
rs9556760	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9556761	0.85[AMR][1000 genomes]
rs9584602	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9634497	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98219000-98221000	Weak transcription	Fetal Brain Male	brain
2	chr13:98219400-98221000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:98219400-98221200	Enhancers	Duodenum Mucosa	Duodenum
4	chr13:98219400-98221600	Enhancers	HepG2	liver
5	chr13:98219600-98221200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:98219600-98221200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:98219600-98221200	Enhancers	Fetal Intestine Large	intestine
8	chr13:98219600-98221200	Enhancers	Fetal Intestine Small	intestine
9	chr13:98219800-98221200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:98219800-98221200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr13:98219800-98221200	Enhancers	HMEC	breast
12	chr13:98219800-98221200	Enhancers	NHEK	skin
13	chr13:98219800-98221400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:98219800-98222000	Enhancers	Adipose Nuclei	Adipose
15	chr13:98219800-98223200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:98219800-98223200	Enhancers	Placenta	Placenta
17	chr13:98220000-98221200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr13:98220000-98221400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr13:98220000-98221800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:98220000-98223200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:98220000-98223600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr13:98220200-98221000	Enhancers	NHDF-Ad	bronchial
23	chr13:98220200-98221200	Enhancers	Fetal Lung	lung
24	chr13:98220200-98221200	Enhancers	Stomach Mucosa	stomach
25	chr13:98220200-98221400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr13:98220200-98222200	Enhancers	Lung	lung
27	chr13:98220200-98222400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr13:98220200-98223200	Enhancers	Fetal Muscle Leg	muscle
29	chr13:98220200-98223400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr13:98220400-98221200	Enhancers	H9 Cell Line	embryonic stem cell
31	chr13:98220400-98221200	Enhancers	Fetal Brain Female	brain
32	chr13:98220400-98221200	Enhancers	Pancreas	Pancrea
33	chr13:98220400-98221400	Enhancers	Right Atrium	heart
34	chr13:98220400-98221400	Enhancers	A549	lung
35	chr13:98220400-98222200	Enhancers	Esophagus	oesophagus
36	chr13:98220400-98222200	Enhancers	Left Ventricle	heart
37	chr13:98220400-98223200	Enhancers	H1 Cell Line	embryonic stem cell
38	chr13:98220600-98222200	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr13:98220600-98222200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr13:98220600-98223200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr13:98220800-98221000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr13:98220800-98221000	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr13:98220800-98221400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:98220800-98221400	Enhancers	Gastric	stomach
45	chr13:98220800-98221600	Enhancers	Spleen	Spleen
46	chr13:98220800-98222000	Enhancers	HUVEC	blood vessel
47	chr13:98220800-98223600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links