Variant report

Variant	rs9556743
Chromosome Location	chr13:98223016-98223017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1041270	0.80[EUR][1000 genomes]
rs10851073	0.94[ASN][1000 genomes]
rs12869921	0.93[ASN][1000 genomes]
rs12870589	0.96[ASN][1000 genomes]
rs184729	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs184731	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1854225	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1887561	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2094474	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2389861	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2769280	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2769283	0.85[ASN][1000 genomes]
rs2770229	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4346086	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4400904	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4534691	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4771275	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4771276	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4772004	0.92[ASN][1000 genomes]
rs7139828	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7338682	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs787467	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7981655	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7982432	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs812010	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9300422	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9513256	0.96[ASN][1000 genomes]
rs9516959	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9516961	0.93[ASN][1000 genomes]
rs9516962	0.96[ASN][1000 genomes]
rs9516963	0.96[ASN][1000 genomes]
rs9516967	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516974	0.94[ASN][1000 genomes]
rs9516977	0.91[ASN][1000 genomes]
rs9516978	0.91[ASN][1000 genomes]
rs9556742	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9556744	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556745	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556748	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556751	0.96[ASN][1000 genomes]
rs9556752	0.96[ASN][1000 genomes]
rs9556759	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556760	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556761	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556762	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9584602	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584604	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9634497	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98219800-98223200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:98219800-98223200	Enhancers	Placenta	Placenta
3	chr13:98220000-98223200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:98220000-98223600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:98220200-98223200	Enhancers	Fetal Muscle Leg	muscle
6	chr13:98220200-98223400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:98220400-98223200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:98220600-98223200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:98220800-98223600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr13:98221000-98223200	Enhancers	Ovary	ovary
11	chr13:98221000-98223400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr13:98221200-98224600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:98221200-98225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr13:98221200-98225200	Weak transcription	Fetal Intestine Small	intestine
15	chr13:98221400-98223200	Enhancers	Fetal Kidney	kidney
16	chr13:98221400-98234200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:98221600-98223200	Enhancers	NHDF-Ad	bronchial
18	chr13:98221600-98225200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:98221800-98223200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:98221800-98223200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:98221800-98223200	Enhancers	Fetal Stomach	stomach
22	chr13:98222000-98223200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr13:98222000-98223600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr13:98222200-98223200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr13:98222200-98223200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr13:98222200-98223200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr13:98222200-98223200	Enhancers	Fetal Lung	lung
28	chr13:98222200-98223400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr13:98222400-98223200	Enhancers	Fetal Brain Male	brain
30	chr13:98222600-98223200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr13:98222600-98229200	Weak transcription	HepG2	liver
32	chr13:98222800-98223200	Enhancers	Fetal Brain Female	brain
33	chr13:98223000-98223200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr13:98223000-98223200	Enhancers	Brain Anterior Caudate	brain
35	chr13:98223000-98223200	Enhancers	Right Atrium	heart
36	chr13:98223000-98223200	Enhancers	Stomach Smooth Muscle	stomach

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