Variant report

Variant	rs9516962
Chromosome Location	chr13:98225306-98225307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10851073	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12869921	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12870589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184729	0.88[ASN][1000 genomes]
rs184731	0.90[ASN][1000 genomes]
rs1854225	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1887561	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2094474	0.91[ASN][1000 genomes]
rs2389861	0.93[ASN][1000 genomes]
rs2769280	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2769283	0.83[ASN][1000 genomes]
rs2770229	0.91[ASN][1000 genomes]
rs4346086	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4400904	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4534691	0.91[ASN][1000 genomes]
rs4771275	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4771276	0.99[ASN][1000 genomes]
rs4772004	0.95[ASN][1000 genomes]
rs4772006	0.80[ASN][1000 genomes]
rs7139828	0.90[ASN][1000 genomes]
rs7338682	0.90[ASN][1000 genomes]
rs787467	0.88[ASN][1000 genomes]
rs7981655	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7982432	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9300422	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9513256	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516953	0.86[EUR][1000 genomes]
rs9516959	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9516961	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516963	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516967	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516974	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516977	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516978	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556743	0.96[ASN][1000 genomes]
rs9556744	0.95[ASN][1000 genomes]
rs9556745	0.97[ASN][1000 genomes]
rs9556748	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556752	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556759	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556760	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556761	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556762	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584602	0.96[ASN][1000 genomes]
rs9584604	0.90[ASN][1000 genomes]
rs9634497	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98221400-98234200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:98222600-98229200	Weak transcription	HepG2	liver
3	chr13:98224600-98225600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:98225000-98225600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:98225000-98225600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:98225000-98225800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:98225200-98225400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr13:98225200-98225400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr13:98225200-98225400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:98225200-98225400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr13:98225200-98225400	Enhancers	Fetal Lung	lung
12	chr13:98225200-98225600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:98225200-98225600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:98225200-98225600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:98225200-98225600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:98225200-98225600	Enhancers	Fetal Intestine Small	intestine
17	chr13:98225200-98225800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr13:98225200-98225800	Enhancers	NHDF-Ad	bronchial
19	chr13:98225200-98226000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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