Variant report

Variant	rs9516953
Chromosome Location	chr13:98172508-98172509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1041270	0.83[ASN][1000 genomes]
rs10851073	0.83[EUR][1000 genomes]
rs1159278	0.95[CHB][hapmap];0.86[MEX][hapmap]
rs12870589	0.83[EUR][1000 genomes]
rs1304392	0.95[CHB][hapmap];0.86[MEX][hapmap]
rs184729	0.80[ASN][1000 genomes]
rs2389909	0.90[CHB][hapmap]
rs2389910	0.95[CHB][hapmap];0.90[MEX][hapmap];0.84[AMR][1000 genomes]
rs2769283	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4346086	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7322222	0.95[CHB][hapmap];0.81[MEX][hapmap];0.82[ASN][1000 genomes]
rs9513256	0.81[EUR][1000 genomes]
rs9516962	0.86[EUR][1000 genomes]
rs9516963	0.86[EUR][1000 genomes]
rs9516974	0.80[EUR][1000 genomes]
rs9516977	0.80[EUR][1000 genomes]
rs9554396	0.95[CHB][hapmap]
rs9556751	0.86[EUR][1000 genomes]
rs9556752	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98172400-98174000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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