Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98137969..98140172-chr13:98141764..98143369,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1159278	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs11616843	0.85[ASN][1000 genomes]
rs1304392	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1467693	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs184729	0.85[EUR][1000 genomes]
rs184731	0.84[EUR][1000 genomes]
rs2094474	0.84[EUR][1000 genomes]
rs2389909	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2389910	1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs2770229	0.84[EUR][1000 genomes]
rs4534691	0.84[EUR][1000 genomes]
rs4771276	0.82[EUR][1000 genomes]
rs7139828	0.82[EUR][1000 genomes]
rs7322222	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7338682	0.83[EUR][1000 genomes]
rs787467	0.85[EUR][1000 genomes]
rs9300410	0.81[MEX][hapmap]
rs9513245	0.92[ASN][1000 genomes]
rs9516938	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9516953	0.83[ASN][1000 genomes]
rs9554396	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs9556743	0.80[EUR][1000 genomes]
rs9556744	0.80[EUR][1000 genomes]
rs9556745	0.80[EUR][1000 genomes]
rs9584602	0.80[EUR][1000 genomes]
rs9634445	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9634497	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98142600-98145200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:98143200-98145800	Enhancers	HepG2	liver

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