Variant report

Variant	rs9516938
Chromosome Location	chr13:98122108-98122109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98101345..98104085-chr13:98121478..98123509,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1041270	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1159278	0.86[ASN][1000 genomes]
rs11616843	0.92[ASN][1000 genomes]
rs1304392	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1467693	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2389909	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2389910	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322222	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7328713	0.87[ASN][1000 genomes]
rs9513245	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9554396	0.92[ASN][1000 genomes]
rs9634445	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98087400-98122200	Weak transcription	Gastric	stomach
2	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
3	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:98089800-98122800	Weak transcription	Small Intestine	intestine
5	chr13:98091800-98123000	Weak transcription	HSMM	muscle
6	chr13:98101400-98123400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:98102200-98126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:98106000-98124200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:98108600-98134600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:98112000-98126600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:98112200-98125000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:98113200-98124200	Weak transcription	Spleen	Spleen
13	chr13:98113400-98127200	Weak transcription	Right Atrium	heart
14	chr13:98116800-98124800	Weak transcription	Fetal Intestine Small	intestine
15	chr13:98116800-98126600	Weak transcription	Fetal Stomach	stomach
16	chr13:98116800-98127200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:98117000-98124200	Weak transcription	Lung	lung
18	chr13:98117000-98124400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr13:98117000-98126600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:98117000-98126600	Weak transcription	Aorta	Aorta
21	chr13:98117000-98130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr13:98117000-98130000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr13:98117200-98123000	Weak transcription	Brain Germinal Matrix	brain
24	chr13:98117200-98126600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr13:98117400-98122200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr13:98117400-98123200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr13:98117400-98126600	Weak transcription	NHDF-Ad	bronchial
28	chr13:98117400-98129600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr13:98117600-98124000	Weak transcription	Placenta	Placenta
30	chr13:98117600-98126400	Weak transcription	Fetal Kidney	kidney
31	chr13:98117600-98127000	Weak transcription	Adipose Nuclei	Adipose
32	chr13:98117800-98122200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr13:98117800-98122800	Weak transcription	Fetal Muscle Leg	muscle
34	chr13:98117800-98123000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr13:98117800-98123000	Weak transcription	Thymus	Thymus
36	chr13:98117800-98124200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr13:98117800-98126600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr13:98117800-98130200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr13:98118000-98122400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr13:98118200-98122200	Weak transcription	Primary B cells from cord blood	blood
41	chr13:98118200-98122200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr13:98118200-98122200	Weak transcription	Dnd41	blood
43	chr13:98118200-98122200	Weak transcription	Osteobl	bone
44	chr13:98118200-98122600	Weak transcription	Fetal Intestine Large	intestine
45	chr13:98118200-98122800	Weak transcription	Primary T cells from cord blood	blood
46	chr13:98118200-98126600	Weak transcription	Left Ventricle	heart
47	chr13:98118200-98126800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr13:98118200-98126800	Weak transcription	Fetal Brain Female	brain
49	chr13:98118200-98127200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr13:98118200-98127200	Weak transcription	Fetal Muscle Trunk	muscle

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