Variant report

Variant	rs9300410
Chromosome Location	chr13:98076178-98076179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:98075639..98078018-chr13:98084903..98087132,2	K562	blood:
2	chr13:98070174..98073119-chr13:98075516..98077748,2	K562	blood:
3	chr13:98072727..98076727-chr13:98084018..98087708,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1159278	0.88[CEU][hapmap]
rs1467693	0.82[EUR][1000 genomes]
rs2389909	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7322222	0.81[MEX][hapmap]
rs7328713	0.89[EUR][1000 genomes]
rs9554396	0.88[CEU][hapmap]
rs9634445	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98074600-98076400	Enhancers	Fetal Heart	heart
2	chr13:98074600-98076400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr13:98074800-98076400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr13:98074800-98076400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr13:98074800-98076400	Enhancers	NHDF-Ad	bronchial
6	chr13:98075000-98076200	Enhancers	Left Ventricle	heart
7	chr13:98075000-98076400	Enhancers	Brain Angular Gyrus	brain
8	chr13:98075000-98076400	Enhancers	Brain Cingulate Gyrus	brain
9	chr13:98075000-98076800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr13:98075200-98076200	Enhancers	Brain Hippocampus Middle	brain
11	chr13:98075600-98076200	Enhancers	Right Ventricle	heart
12	chr13:98075600-98076400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:98075600-98076400	Enhancers	Psoas Muscle	Psoas
14	chr13:98075600-98076600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:98075800-98076400	Enhancers	Osteobl	bone
16	chr13:98075800-98076600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr13:98075800-98077800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr13:98076000-98076200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:98076000-98076400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr13:98076000-98076400	Flanking Active TSS	Brain Substantia Nigra	brain
21	chr13:98076000-98076400	Enhancers	Fetal Lung	lung
22	chr13:98076000-98081800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links