Variant report

Variant	rs9516961
Chromosome Location	chr13:98224857-98224858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10851073	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12869921	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12870589	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs184729	0.85[ASN][1000 genomes]
rs184731	0.87[ASN][1000 genomes]
rs1854225	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1887561	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2094474	0.88[ASN][1000 genomes]
rs2389861	0.90[ASN][1000 genomes]
rs2769280	0.83[ASN][1000 genomes]
rs2769283	0.81[ASN][1000 genomes]
rs2770229	0.88[ASN][1000 genomes]
rs4346086	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4400904	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4534691	0.88[ASN][1000 genomes]
rs4771275	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4771276	0.96[ASN][1000 genomes]
rs4772004	0.92[ASN][1000 genomes]
rs4772006	0.81[ASN][1000 genomes]
rs7139828	0.88[ASN][1000 genomes]
rs7338682	0.88[ASN][1000 genomes]
rs787467	0.86[ASN][1000 genomes]
rs7981655	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7982432	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9300422	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9513256	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516959	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9516962	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516963	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516967	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516974	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516977	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9516978	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556743	0.93[ASN][1000 genomes]
rs9556744	0.93[ASN][1000 genomes]
rs9556745	0.95[ASN][1000 genomes]
rs9556748	0.96[ASN][1000 genomes]
rs9556751	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556752	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556759	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556760	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556761	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556762	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9584602	0.93[ASN][1000 genomes]
rs9584604	0.87[ASN][1000 genomes]
rs9634497	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3332968	chr13:98223051-98225049	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98221200-98225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:98221200-98225200	Weak transcription	Fetal Intestine Small	intestine
3	chr13:98221400-98234200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:98221600-98225200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:98222600-98229200	Weak transcription	HepG2	liver
6	chr13:98223200-98225000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:98223200-98225000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:98223200-98225200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:98223200-98225200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:98223200-98225200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:98223200-98225200	Weak transcription	Fetal Lung	lung
12	chr13:98223200-98225200	Weak transcription	NHDF-Ad	bronchial
13	chr13:98223400-98225200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr13:98223400-98225200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr13:98223400-98225200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr13:98223600-98225000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr13:98223600-98225200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:98224600-98225600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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