Variant report

Variant	rs4772006
Chromosome Location	chr13:98257281-98257282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12869921	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12870589	0.80[ASN][1000 genomes]
rs4771275	0.81[ASN][1000 genomes]
rs4771276	0.80[ASN][1000 genomes]
rs9513256	0.80[ASN][1000 genomes]
rs9516961	0.81[ASN][1000 genomes]
rs9516962	0.80[ASN][1000 genomes]
rs9516963	0.80[ASN][1000 genomes]
rs9516974	0.81[ASN][1000 genomes]
rs9516977	0.82[ASN][1000 genomes]
rs9516978	0.82[ASN][1000 genomes]
rs9556751	0.80[ASN][1000 genomes]
rs9556752	0.80[ASN][1000 genomes]
rs9556759	0.82[ASN][1000 genomes]
rs9556760	0.82[ASN][1000 genomes]
rs9556761	0.81[ASN][1000 genomes]
rs9556762	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900941	chr13:98230575-98267751	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1140	chr13:98233230-98278197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98254600-98259400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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