Variant report

Variant	rs9516978
Chromosome Location	chr13:98259886-98259887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10851073	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1159278	0.86[CHB][hapmap]
rs12869921	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12870589	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1304392	0.86[CHB][hapmap]
rs184729	0.85[ASN][1000 genomes]
rs184731	0.87[ASN][1000 genomes]
rs1854225	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1887561	0.88[ASN][1000 genomes]
rs2094474	0.88[ASN][1000 genomes]
rs2389861	0.91[ASN][1000 genomes]
rs2389909	0.81[CHB][hapmap]
rs2389910	0.86[CHB][hapmap]
rs2769280	0.83[ASN][1000 genomes]
rs2769283	0.80[ASN][1000 genomes]
rs2770229	0.88[ASN][1000 genomes]
rs4346086	0.85[ASN][1000 genomes]
rs4400904	0.87[ASN][1000 genomes]
rs4534691	0.88[ASN][1000 genomes]
rs4771275	0.94[ASN][1000 genomes]
rs4771276	0.94[ASN][1000 genomes]
rs4772004	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4772006	0.82[ASN][1000 genomes]
rs7139828	0.86[ASN][1000 genomes]
rs7322222	0.86[CHB][hapmap]
rs7338682	0.86[ASN][1000 genomes]
rs787467	0.85[ASN][1000 genomes]
rs7981655	0.93[ASN][1000 genomes]
rs7982432	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9300422	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9513256	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516959	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9516961	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9516962	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516963	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516967	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516974	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9516977	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9554396	0.86[CHB][hapmap]
rs9556743	0.91[ASN][1000 genomes]
rs9556744	0.90[ASN][1000 genomes]
rs9556745	0.92[ASN][1000 genomes]
rs9556748	0.92[ASN][1000 genomes]
rs9556751	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556752	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556759	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556760	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556761	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556762	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9584602	0.91[ASN][1000 genomes]
rs9584604	0.85[ASN][1000 genomes]
rs9634497	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900941	chr13:98230575-98267751	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1140	chr13:98233230-98278197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98259400-98260000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links