Variant report
Variant | rs1854227 |
---|---|
Chromosome Location | chr13:98238436-98238437 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10851073 | 0.82[EUR][1000 genomes] |
rs12428935 | 0.85[EUR][1000 genomes] |
rs12869921 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs12870589 | 0.82[EUR][1000 genomes] |
rs173241 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs184729 | 0.84[AMR][1000 genomes] |
rs184731 | 0.84[AMR][1000 genomes] |
rs1854226 | 0.81[EUR][1000 genomes] |
rs2094474 | 0.84[AMR][1000 genomes] |
rs2769280 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2769283 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs2770220 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2770229 | 0.84[AMR][1000 genomes] |
rs4534691 | 0.85[AMR][1000 genomes] |
rs4771276 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs7139828 | 0.84[AMR][1000 genomes] |
rs7338682 | 0.84[AMR][1000 genomes] |
rs787467 | 0.83[AMR][1000 genomes] |
rs7981655 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs812010 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9513256 | 0.81[EUR][1000 genomes] |
rs9556742 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9556744 | 0.82[AMR][1000 genomes] |
rs9556745 | 0.82[AMR][1000 genomes] |
rs9556748 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9556761 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs9634497 | 0.80[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1043113 | chr13:98136208-98485012 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv541884 | chr13:98136208-98485012 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv900940 | chr13:98225221-98281637 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv900941 | chr13:98230575-98267751 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv1140 | chr13:98233230-98278197 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:98237000-98240200 | Weak transcription | Fetal Heart | heart |
2 | chr13:98237400-98239000 | Weak transcription | Fetal Intestine Large | intestine |