Variant report

Variant	rs2770220
Chromosome Location	chr13:98188759-98188760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs173241	0.84[EUR][1000 genomes]
rs184729	0.81[AMR][1000 genomes]
rs184731	0.81[AMR][1000 genomes]
rs1854227	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2094474	0.81[AMR][1000 genomes]
rs2769280	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2769283	0.81[AMR][1000 genomes]
rs2770229	0.81[AMR][1000 genomes]
rs4534691	0.82[AMR][1000 genomes]
rs7139828	0.81[AMR][1000 genomes]
rs7338682	0.81[AMR][1000 genomes]
rs7981655	0.86[AMR][1000 genomes]
rs812010	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9556742	0.86[AMR][1000 genomes]
rs9556761	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98186000-98190400	Weak transcription	Lung	lung
2	chr13:98188400-98191800	Weak transcription	NHDF-Ad	bronchial
3	chr13:98188400-98192800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:98188600-98190400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:98188600-98191800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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