Variant report

Variant	rs12876820
Chromosome Location	chr13:50464624-50464625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:50464614-50464664	HEEpiC	esophagus:	n/a
2	chr13:50464614-50464664	Hepatocyte	liver:	n/a
3	chr13:50464614-50464664	Caco-2	colon:	n/a
4	chr13:50464614-50464664	GM19239	blood:	n/a
5	chr13:50464614-50464664	PrEC	prostate:	n/a
6	chr13:50464614-50464664	PANC-1	pancreas:	n/a
7	chr13:50464614-50464664	AG09309	skin:	n/a
8	chr13:50464614-50464664	SK-N-MC	brain:	n/a
9	chr13:50464614-50464664	NT2-D1	testis:	n/a
10	chr13:50464614-50464664	U87	brain:	n/a
11	chr13:50464614-50464664	T-47D	breast:	n/a
12	chr13:50464614-50464664	MCF10A-Er-Src	breast:	n/a
13	chr13:50464614-50464664	HCT-116	colon:	n/a
14	chr13:50464614-50464664	HRE	kidney:	n/a
15	chr13:50464614-50464664	A549	lung:	n/a
16	chr13:50464614-50464664	NH-A	brain:	n/a
17	chr13:50464614-50464664	NB4	blood:	n/a
18	chr13:50464614-50464664	HCF	heart:	n/a
19	chr13:50464614-50464664	HCPEpiC	choroid plexus:	n/a
20	chr13:50464614-50464664	HPAEpiC	pulmonary alveolar:	n/a
21	chr13:50464614-50464664	AG04449	skin:	fetal
22	chr13:50464614-50464664	RPTEC	kidney:	n/a
23	chr13:50464614-50464664	HEK293	kidney:	embryo
24	chr13:50464614-50464664	HAEpiC	amniotic membrane:	n/a
25	chr13:50464614-50464664	Hela-S3	cervix:	n/a
26	chr13:50464614-50464664	AoSMC	blood vessel:	n/a
27	chr13:50464614-50464664	MCF-7	breast:	n/a
28	chr13:50464614-50464664	AG10803	skin:	n/a
29	chr13:50464614-50464664	K562	blood:	n/a
30	chr13:50464614-50464664	GM12891	blood:	n/a
31	chr13:50464614-50464664	HepG2	liver:	n/a
32	chr13:50464614-50464664	HCM	heart:	n/a
33	chr13:50464614-50464664	HNPCEpiC	eye:	n/a
34	chr13:50464614-50464664	GM06990	blood:	n/a
35	chr13:50464614-50464664	AG04450	lung:	fetal
36	chr13:50464614-50464664	PFSK-1	brain:	n/a
37	chr13:50464614-50464664	HRPEpiC	eye:	n/a
38	chr13:50464614-50464664	H1-hESC	embryonic stem cell:	embryo
39	chr13:50464614-50464664	BJ	skin:	n/a
40	chr13:50464614-50464664	SK-N-SH	brain:	n/a
41	chr13:50464614-50464664	ProgFib	skin:	n/a
42	chr13:50464614-50464664	AG09319	gingival:	n/a
43	chr13:50464614-50464664	LNCaP	prostate:	n/a
44	chr13:50464614-50464664	CMK	blood:	n/a
45	chr13:50464614-50464664	SAEC	small airway:	n/a
46	chr13:50464614-50464664	HUVEC	blood vessel:	n/a
47	chr13:50464614-50464664	HRCEpiC	kidney:	n/a
48	chr13:50464614-50464664	HMEC	breast:	n/a
49	chr13:50464614-50464664	SK-N-SH_RA	brain:	n/a
50	chr13:50464614-50464664	GM12892	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50464224..50465231-chr14:39736139..39736859,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM13-8	chr13:50464545-50467516	NR_003268

No data

Variant related genes	Relation type
CTAGE10P	CpG island
RNY4P30	CpG island
ENSG00000258940	Chromatin interaction
ENSG00000150527	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11839292	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12853359	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12872335	0.91[EUR][1000 genomes]
rs1523178	1.00[AFR][1000 genomes]
rs2066544	0.87[ASN][1000 genomes]
rs2066581	0.87[ASN][1000 genomes]
rs2066590	1.00[AFR][1000 genomes]
rs2407884	0.87[ASN][1000 genomes]
rs2812203	1.00[AFR][1000 genomes]
rs6561570	0.87[ASN][1000 genomes]
rs7318151	0.87[ASN][1000 genomes]
rs9316482	0.87[ASN][1000 genomes]
rs9316484	1.00[ASW][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[ASN][1000 genomes]
rs9526629	0.87[ASN][1000 genomes]
rs9535391	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535403	1.00[ASN][1000 genomes]
rs9535410	0.87[ASN][1000 genomes]
rs9535411	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9535414	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9535415	1.00[ASN][1000 genomes]
rs9535416	1.00[JPT][hapmap]
rs9740075	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436655	chr13:50462077-50472044	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50464600-50464800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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