Variant report

Variant	rs9526629
Chromosome Location	chr13:50548521-50548522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50546165..50548667-chr13:50566546..50568183,2	MCF-7	breast:
2	chr13:50543750..50545594-chr13:50547899..50550003,2	MCF-7	breast:
3	chr13:50546094..50549679-chr13:50569848..50571713,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264864	Chromatin interaction
ENSG00000204977	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11839292	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12876820	0.87[ASN][1000 genomes]
rs1323450	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2066544	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066581	0.89[AFR][1000 genomes]
rs2407884	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561570	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7318151	0.83[AFR][1000 genomes]
rs9316482	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316484	0.87[ASN][1000 genomes]
rs9535403	0.87[ASN][1000 genomes]
rs9535410	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535411	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535414	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9535415	0.87[ASN][1000 genomes]
rs9535416	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9740075	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50522400-50550600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr13:50529600-50550000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr13:50531400-50550400	Weak transcription	NHDF-Ad	bronchial
4	chr13:50533000-50552200	Weak transcription	Ovary	ovary
5	chr13:50534400-50550400	Weak transcription	HSMM	muscle
6	chr13:50536400-50552800	Weak transcription	Fetal Heart	heart
7	chr13:50538200-50550400	Weak transcription	Brain Substantia Nigra	brain
8	chr13:50538200-50558000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:50538800-50550400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:50539000-50548800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr13:50539000-50570000	Weak transcription	Fetal Intestine Small	intestine
12	chr13:50539800-50550400	Weak transcription	A549	lung
13	chr13:50540000-50550400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:50540200-50562200	Weak transcription	Adipose Nuclei	Adipose
15	chr13:50540400-50550400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:50540400-50550400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:50540400-50569800	Weak transcription	Primary T cells from cord blood	blood
18	chr13:50540600-50549400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:50542600-50550800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr13:50543600-50570400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:50544000-50549200	Weak transcription	Osteobl	bone
22	chr13:50545400-50555800	Weak transcription	Fetal Muscle Leg	muscle
23	chr13:50545400-50559000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr13:50545800-50558000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:50545800-50562000	Weak transcription	Fetal Intestine Large	intestine
26	chr13:50546000-50569200	Weak transcription	Primary B cells from cord blood	blood
27	chr13:50546000-50570000	Weak transcription	NHLF	lung
28	chr13:50546600-50549600	Strong transcription	Fetal Thymus	thymus
29	chr13:50546800-50550400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:50547000-50550400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:50547000-50550800	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr13:50547200-50550600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr13:50547400-50549600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr13:50547400-50550800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr13:50547600-50550400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr13:50547600-50559800	Weak transcription	Pancreas	Pancrea
37	chr13:50547600-50561800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr13:50547600-50569800	Weak transcription	Dnd41	blood
39	chr13:50547800-50550400	Weak transcription	HepG2	liver
40	chr13:50547800-50550600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:50547800-50550800	Weak transcription	Stomach Mucosa	stomach
42	chr13:50548000-50550400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr13:50548000-50551000	Weak transcription	Thymus	Thymus

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