Variant report

Variant	rs12884590
Chromosome Location	chr14:39961490-39961491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTAGE5-1	chr14:39961459-39962715	XLOC_010811
2	lnc-CTAGE5-1	chr14:39961459-39961950	XLOC_010811
3	lnc-CTAGE5-1	chr14:39961459-39962715	XLOC_010811
4	lnc-CTAGE5-1	chr14:39961459-39961760	ENSG00000258526
5	lnc-CTAGE5-1	chr14:39961459-39961760	ENSG00000258526
6	lnc-CTAGE5-1	chr14:39961459-39961974	ENSG00000258526
7	lnc-CTAGE5-1	chr14:39961459-39961973	NONHSAT036548
8	lnc-CTAGE5-1	chr14:39961459-39962715	XLOC_010811

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12894147	0.94[AFR][1000 genomes]
rs34080511	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35980339	0.87[AFR][1000 genomes]
rs71407786	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv456212	chr14:39957437-40096888	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv564418	chr14:39957437-40096888	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39958200-39964800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:39958200-39968600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:39960200-39961600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:39960200-39961600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:39960200-39961800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr14:39960200-39962000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:39960400-39961600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:39960400-39961600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:39960400-39961800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:39960400-39961800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:39960400-39961800	Enhancers	HSMM	muscle
12	chr14:39960400-39962000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:39960600-39961600	Enhancers	Fetal Heart	heart
14	chr14:39960600-39961600	Enhancers	A549	lung
15	chr14:39960600-39961800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:39960600-39961800	Enhancers	Brain Anterior Caudate	brain
17	chr14:39960600-39961800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr14:39960600-39962000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:39960600-39962000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr14:39960600-39962000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:39960600-39962000	Enhancers	NHDF-Ad	bronchial
22	chr14:39960800-39961800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:39960800-39961800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr14:39961000-39961600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:39961000-39961600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:39961000-39962000	Enhancers	Osteobl	bone
27	chr14:39961200-39962000	Enhancers	NH-A	brain
28	chr14:39961400-39966400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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