Variant report

Variant	rs12894147
Chromosome Location	chr14:39945447-39945448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10162564	1.00[YRI][hapmap]
rs11847057	0.95[ASN][1000 genomes]
rs12589427	0.91[ASN][1000 genomes]
rs12590172	0.81[JPT][hapmap]
rs12884590	0.94[AFR][1000 genomes]
rs12884747	0.96[ASN][1000 genomes]
rs12896502	0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1304254	0.81[ASN][1000 genomes]
rs17109296	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17109300	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17109328	0.94[ASN][1000 genomes]
rs1950329	0.95[ASN][1000 genomes]
rs1950330	0.80[ASN][1000 genomes]
rs1950334	0.94[ASN][1000 genomes]
rs1955718	0.92[ASN][1000 genomes]
rs1955729	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs2057137	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2057138	0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2057139	0.94[ASN][1000 genomes]
rs34432449	0.92[ASN][1000 genomes]
rs34687394	0.97[ASN][1000 genomes]
rs35643160	0.96[ASN][1000 genomes]
rs35708308	0.81[ASN][1000 genomes]
rs35923045	0.94[ASN][1000 genomes]
rs35980339	0.82[AFR][1000 genomes]
rs4899277	0.92[ASN][1000 genomes]
rs4899278	0.92[ASN][1000 genomes]
rs4899287	0.97[ASN][1000 genomes]
rs4899291	0.97[ASN][1000 genomes]
rs4902622	0.86[CHB][hapmap]
rs4902648	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4902692	0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs71407786	0.81[EUR][1000 genomes]
rs7158709	0.96[ASN][1000 genomes]
rs7161403	0.82[JPT][hapmap]
rs719455	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs8020250	0.94[ASN][1000 genomes]
rs910370	0.87[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39939000-39946000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:39939000-39954600	Weak transcription	Brain Hippocampus Middle	brain

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