Variant report

Variant	rs35923045
Chromosome Location	chr14:39967810-39967811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11157067	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11847057	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587625	0.94[AFR][1000 genomes]
rs12588110	0.94[AFR][1000 genomes]
rs12588175	0.92[AFR][1000 genomes]
rs12588483	0.91[AFR][1000 genomes]
rs12589427	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12590172	0.94[AFR][1000 genomes]
rs12880644	0.94[AFR][1000 genomes]
rs12884747	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12886696	0.84[ASN][1000 genomes]
rs12886769	0.88[AFR][1000 genomes]
rs12894147	0.94[ASN][1000 genomes]
rs12896502	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1304254	0.87[ASN][1000 genomes]
rs17109296	0.82[ASN][1000 genomes]
rs17109300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17109328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807940	0.84[ASN][1000 genomes]
rs1950329	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1950330	0.83[ASN][1000 genomes]
rs1950331	0.82[ASN][1000 genomes]
rs1950333	0.82[ASN][1000 genomes]
rs1950334	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950335	0.84[ASN][1000 genomes]
rs1950336	0.93[AFR][1000 genomes]
rs1950338	0.92[AFR][1000 genomes]
rs1955718	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1955726	0.82[ASN][1000 genomes]
rs1955729	0.84[ASN][1000 genomes]
rs2057137	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057138	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2057139	0.98[ASN][1000 genomes]
rs2207291	0.92[AFR][1000 genomes]
rs2207293	0.84[ASN][1000 genomes]
rs2274395	0.94[AFR][1000 genomes]
rs2415549	0.94[AFR][1000 genomes]
rs2415550	0.93[AFR][1000 genomes]
rs2899889	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34432449	0.92[ASN][1000 genomes]
rs34649642	0.95[AFR][1000 genomes]
rs34687394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35459433	0.94[AFR][1000 genomes]
rs35553183	0.94[AFR][1000 genomes]
rs35643160	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35693868	0.92[AFR][1000 genomes]
rs35708308	0.82[ASN][1000 genomes]
rs36010374	0.93[AFR][1000 genomes]
rs3814860	0.94[AFR][1000 genomes]
rs4899277	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4899278	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4899287	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4899291	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902622	0.95[AFR][1000 genomes]
rs4902636	0.95[AFR][1000 genomes]
rs4902637	0.95[AFR][1000 genomes]
rs4902648	0.91[AFR][1000 genomes]
rs4902665	0.90[AFR][1000 genomes]
rs4902676	0.92[AFR][1000 genomes]
rs4902692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56046902	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs71407788	0.81[AFR][1000 genomes]
rs71407789	0.92[AFR][1000 genomes]
rs7140983	0.84[AFR][1000 genomes]
rs7152341	0.94[AFR][1000 genomes]
rs7152935	0.92[AFR][1000 genomes]
rs7158709	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72675487	0.94[AFR][1000 genomes]
rs8003397	0.95[AFR][1000 genomes]
rs8003621	0.91[AFR][1000 genomes]
rs8006123	0.94[AFR][1000 genomes]
rs8006321	0.94[AFR][1000 genomes]
rs8020250	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910370	0.89[AFR][1000 genomes]
rs910371	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv456212	chr14:39957437-40096888	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv564418	chr14:39957437-40096888	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39958200-39968600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links