The 2.0 version of rSNPBase

Variant report

Variant rs12588110
Chromosome Location chr14:39897797-39897798
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:39864600-39898800 Weak transcription Rectal Smooth Muscle rectum
2 chr14:39865000-39898200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr14:39886600-39898000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr14:39886600-39900000 Weak transcription Esophagus oesophagus
5 chr14:39886600-39900000 Weak transcription Pancreas Pancrea
6 chr14:39886800-39899200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr14:39886800-39899600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr14:39887000-39899200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr14:39887600-39898000 Weak transcription Fetal Stomach stomach
10 chr14:39889600-39898800 Weak transcription Stomach Smooth Muscle stomach
11 chr14:39889800-39898800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
12 chr14:39890600-39897800 Enhancers Primary T helper cells fromperipheralblood blood
13 chr14:39890600-39897800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr14:39890600-39897800 Weak transcription Fetal Brain Female brain
15 chr14:39891000-39898400 Weak transcription Fetal Kidney kidney
16 chr14:39891200-39898800 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr14:39891800-39898800 Weak transcription Aorta Aorta
18 chr14:39891800-39898800 Weak transcription Gastric stomach
19 chr14:39891800-39898800 Weak transcription Ovary ovary
20 chr14:39891800-39898800 Weak transcription Right Ventricle heart
21 chr14:39891800-39899000 Weak transcription Fetal Intestine Small intestine
22 chr14:39891800-39899000 Weak transcription Small Intestine intestine
23 chr14:39892800-39898000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr14:39893000-39899400 Weak transcription Fetal Intestine Large intestine
25 chr14:39893600-39898000 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr14:39893600-39898800 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr14:39894400-39898800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr14:39894400-39898800 Enhancers Primary T killer memory cells from peripheral blood blood
29 chr14:39894800-39898800 Enhancers Primary T helper naive cells from peripheral blood blood
30 chr14:39895400-39898800 Enhancers Primary neutrophils fromperipheralblood blood
31 chr14:39895400-39898800 Enhancers Dnd41 blood
32 chr14:39895800-39897800 Enhancers Primary T cells fromperipheralblood blood
33 chr14:39895800-39899000 Weak transcription Spleen Spleen
34 chr14:39896000-39897800 Weak transcription Brain Angular Gyrus brain
35 chr14:39896000-39898000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr14:39896000-39898000 Weak transcription Colon Smooth Muscle Colon
37 chr14:39896000-39898400 Weak transcription NHEK skin
38 chr14:39896000-39898600 Enhancers Primary T helper cells PMA-I stimulated --
39 chr14:39896000-39898800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr14:39896000-39898800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr14:39896000-39898800 Weak transcription NHDF-Ad bronchial
42 chr14:39896000-39899000 Weak transcription Placenta Placenta
43 chr14:39896000-39899800 Weak transcription HSMM muscle
44 chr14:39896000-39900000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr14:39896000-39900200 Weak transcription H9 Cell Line embryonic stem cell
46 chr14:39896200-39898000 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr14:39896200-39898000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr14:39896200-39898000 Weak transcription Adipose Nuclei Adipose
49 chr14:39896200-39898000 Weak transcription Skeletal Muscle Male skeletal muscle
50 chr14:39896200-39898200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015