Variant report

Variant	rs12883652
Chromosome Location	chr14:39913700-39913701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10143351	0.84[AFR][1000 genomes]
rs10145949	0.85[AFR][1000 genomes]
rs12050477	0.87[ASN][1000 genomes]
rs12232110	0.80[ASN][1000 genomes]
rs12587625	0.87[ASN][1000 genomes]
rs12588110	0.85[ASN][1000 genomes]
rs12588175	0.87[ASN][1000 genomes]
rs12588483	0.87[ASN][1000 genomes]
rs12590172	0.87[ASN][1000 genomes]
rs12880644	0.85[ASN][1000 genomes]
rs12882250	0.85[ASN][1000 genomes]
rs12886696	0.80[ASN][1000 genomes]
rs12886769	0.85[ASN][1000 genomes]
rs12897960	0.85[ASN][1000 genomes]
rs17109296	0.82[ASN][1000 genomes]
rs1807940	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1950330	0.81[ASN][1000 genomes]
rs1950331	0.80[ASN][1000 genomes]
rs1950333	0.80[ASN][1000 genomes]
rs1950335	0.80[ASN][1000 genomes]
rs1950336	0.84[ASN][1000 genomes]
rs1950338	0.87[ASN][1000 genomes]
rs1955726	0.80[ASN][1000 genomes]
rs1955729	0.80[ASN][1000 genomes]
rs2038278	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207291	0.84[ASN][1000 genomes]
rs2207293	0.80[ASN][1000 genomes]
rs2274395	0.85[ASN][1000 genomes]
rs2415549	0.87[ASN][1000 genomes]
rs2415550	0.84[ASN][1000 genomes]
rs2899889	0.80[ASN][1000 genomes]
rs34649642	0.84[ASN][1000 genomes]
rs35459433	0.87[ASN][1000 genomes]
rs35553183	0.85[ASN][1000 genomes]
rs35693868	0.84[ASN][1000 genomes]
rs35708308	0.82[ASN][1000 genomes]
rs36010374	0.84[ASN][1000 genomes]
rs3814860	0.85[ASN][1000 genomes]
rs4899245	0.85[ASN][1000 genomes]
rs4902598	0.84[ASN][1000 genomes]
rs4902599	0.84[ASN][1000 genomes]
rs4902622	0.80[ASN][1000 genomes]
rs4902636	0.84[ASN][1000 genomes]
rs4902637	0.84[ASN][1000 genomes]
rs4902648	0.81[ASN][1000 genomes]
rs4902665	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4902676	0.83[ASN][1000 genomes]
rs56046902	0.84[ASN][1000 genomes]
rs71407788	0.84[ASN][1000 genomes]
rs71407789	0.84[ASN][1000 genomes]
rs7140983	0.83[ASN][1000 genomes]
rs7148377	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152341	0.85[ASN][1000 genomes]
rs7152935	0.87[ASN][1000 genomes]
rs7153413	0.87[ASN][1000 genomes]
rs7160664	0.87[AFR][1000 genomes]
rs7161403	0.87[ASN][1000 genomes]
rs718364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675487	0.82[ASN][1000 genomes]
rs8003397	0.84[ASN][1000 genomes]
rs8003621	0.85[ASN][1000 genomes]
rs8006123	0.85[ASN][1000 genomes]
rs8006321	0.85[ASN][1000 genomes]
rs8006893	0.85[AFR][1000 genomes]
rs8019328	0.85[AFR][1000 genomes]
rs910370	0.84[ASN][1000 genomes]
rs910371	0.84[ASN][1000 genomes]
rs9332387	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39903000-39916400	Weak transcription	Fetal Heart	heart
2	chr14:39911600-39918000	Weak transcription	Gastric	stomach
3	chr14:39911800-39916400	Weak transcription	Lung	lung
4	chr14:39913200-39914200	Weak transcription	GM12878-XiMat	blood

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