The 2.0 version of rSNPBase

Variant report

Variant rs8003397
Chromosome Location chr14:39891459-39891460
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:39863400-39891600 Weak transcription Small Intestine intestine
2 chr14:39864600-39898800 Weak transcription Rectal Smooth Muscle rectum
3 chr14:39865000-39898200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr14:39869000-39895600 Weak transcription Hela-S3 cervix
5 chr14:39882200-39895400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr14:39886000-39895600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr14:39886200-39895600 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr14:39886400-39892600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr14:39886400-39895600 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr14:39886600-39891800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr14:39886600-39894000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr14:39886600-39894400 Weak transcription Muscle Satellite Cultured Cells --
13 chr14:39886600-39895600 Weak transcription Fetal Lung lung
14 chr14:39886600-39895800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr14:39886600-39895800 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr14:39886600-39898000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr14:39886600-39900000 Weak transcription Esophagus oesophagus
18 chr14:39886600-39900000 Weak transcription Pancreas Pancrea
19 chr14:39886800-39892600 Weak transcription Duodenum Mucosa Duodenum
20 chr14:39886800-39895600 Weak transcription Primary B cells from peripheral blood blood
21 chr14:39886800-39895600 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr14:39886800-39895600 Weak transcription HepG2 liver
23 chr14:39886800-39895800 Weak transcription Brain Anterior Caudate brain
24 chr14:39886800-39895800 Weak transcription Fetal Thymus thymus
25 chr14:39886800-39895800 Weak transcription Thymus Thymus
26 chr14:39886800-39899200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr14:39886800-39899600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr14:39887000-39895800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
29 chr14:39887000-39899200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr14:39887200-39895400 Weak transcription Dnd41 blood
31 chr14:39887200-39895600 Weak transcription GM12878-XiMat blood
32 chr14:39887600-39898000 Weak transcription Fetal Stomach stomach
33 chr14:39888800-39891600 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr14:39889200-39892600 Weak transcription Pancreatic Islets Pancreatic Islet
35 chr14:39889400-39891600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr14:39889400-39895600 Weak transcription Liver Liver
37 chr14:39889600-39892000 Enhancers Primary T helper 17 cells PMA-I stimulated --
38 chr14:39889600-39898800 Weak transcription Stomach Smooth Muscle stomach
39 chr14:39889800-39891800 Enhancers Breast Myoepithelial Primary Cells Breast
40 chr14:39889800-39895400 Weak transcription Primary monocytes fromperipheralblood blood
41 chr14:39889800-39898800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
42 chr14:39890200-39893400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr14:39890200-39895600 Weak transcription Primary hematopoietic stem cells blood
44 chr14:39890200-39895600 Enhancers Primary T helper cells PMA-I stimulated --
45 chr14:39890200-39896800 Enhancers Primary T killer naive cells fromperipheralblood blood
46 chr14:39890400-39891800 Enhancers Primary T killer memory cells from peripheral blood blood
47 chr14:39890400-39895800 Weak transcription Primary T cells fromperipheralblood blood
48 chr14:39890600-39897800 Enhancers Primary T helper cells fromperipheralblood blood
49 chr14:39890600-39897800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr14:39890600-39897800 Weak transcription Fetal Brain Female brain

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Last update: Aug 31, 2015