The 2.0 version of rSNPBase

Variant report

Variant rs2899889
Chromosome Location chr14:39889812-39889813
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:39863400-39891600 Weak transcription Small Intestine intestine
2 chr14:39864600-39898800 Weak transcription Rectal Smooth Muscle rectum
3 chr14:39865000-39891200 Weak transcription Psoas Muscle Psoas
4 chr14:39865000-39898200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr14:39869000-39895600 Weak transcription Hela-S3 cervix
6 chr14:39882200-39895400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr14:39885200-39891400 Weak transcription Gastric stomach
8 chr14:39886000-39890800 Weak transcription Fetal Brain Male brain
9 chr14:39886000-39895600 Weak transcription Brain Inferior Temporal Lobe brain
10 chr14:39886200-39890600 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr14:39886200-39895600 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr14:39886400-39892600 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr14:39886400-39895600 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr14:39886600-39890200 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr14:39886600-39890200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr14:39886600-39890200 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr14:39886600-39890800 Weak transcription Primary T helper naive cells from peripheral blood blood
18 chr14:39886600-39890800 Weak transcription Brain Angular Gyrus brain
19 chr14:39886600-39891200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr14:39886600-39891200 Weak transcription Lung lung
21 chr14:39886600-39891200 Weak transcription Ovary ovary
22 chr14:39886600-39891200 Weak transcription Right Ventricle heart
23 chr14:39886600-39891400 Weak transcription Aorta Aorta
24 chr14:39886600-39891800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr14:39886600-39894000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr14:39886600-39894400 Weak transcription Muscle Satellite Cultured Cells --
27 chr14:39886600-39895600 Weak transcription Fetal Lung lung
28 chr14:39886600-39895800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr14:39886600-39895800 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr14:39886600-39898000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr14:39886600-39900000 Weak transcription Esophagus oesophagus
32 chr14:39886600-39900000 Weak transcription Pancreas Pancrea
33 chr14:39886800-39890200 Weak transcription Primary T cells from cord blood blood
34 chr14:39886800-39890200 Weak transcription Primary T regulatory cells fromperipheralblood blood
35 chr14:39886800-39891200 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr14:39886800-39892600 Weak transcription Duodenum Mucosa Duodenum
37 chr14:39886800-39895600 Weak transcription Primary B cells from peripheral blood blood
38 chr14:39886800-39895600 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr14:39886800-39895600 Weak transcription HepG2 liver
40 chr14:39886800-39895800 Weak transcription Brain Anterior Caudate brain
41 chr14:39886800-39895800 Weak transcription Fetal Thymus thymus
42 chr14:39886800-39895800 Weak transcription Thymus Thymus
43 chr14:39886800-39899200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr14:39886800-39899600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr14:39887000-39895800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
46 chr14:39887000-39899200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr14:39887200-39895400 Weak transcription Dnd41 blood
48 chr14:39887200-39895600 Weak transcription GM12878-XiMat blood
49 chr14:39887600-39891200 Weak transcription Fetal Intestine Small intestine
50 chr14:39887600-39898000 Weak transcription Fetal Stomach stomach

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Last update: Aug 31, 2015