Variant report

Variant	rs4899287
Chromosome Location	chr14:39944726-39944727
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10133417	0.81[CHB][hapmap]
rs10137352	0.81[CHB][hapmap]
rs10137905	0.85[CHB][hapmap]
rs11157067	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11620695	0.81[CHB][hapmap]
rs11847057	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12589427	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12590172	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs12884747	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12886696	0.82[ASN][1000 genomes]
rs12894147	0.97[ASN][1000 genomes]
rs12894855	0.85[CHB][hapmap]
rs12896502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1304254	0.84[ASN][1000 genomes]
rs17109296	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs17109300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109328	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1807940	0.82[ASN][1000 genomes]
rs1950329	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1950330	0.82[ASN][1000 genomes]
rs1950331	0.82[ASN][1000 genomes]
rs1950333	0.82[ASN][1000 genomes]
rs1950334	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1950335	0.82[ASN][1000 genomes]
rs1950336	0.82[ASN][1000 genomes]
rs1955718	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1955726	0.82[ASN][1000 genomes]
rs1955729	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2057137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2057138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057139	0.94[ASN][1000 genomes]
rs2207291	0.82[ASN][1000 genomes]
rs2207293	0.82[ASN][1000 genomes]
rs2274395	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2274396	0.85[CHB][hapmap]
rs2415550	0.82[ASN][1000 genomes]
rs2899889	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34432449	0.99[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34649642	0.82[ASN][1000 genomes]
rs34687394	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35643160	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35708308	0.84[ASN][1000 genomes]
rs35923045	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36010374	0.82[ASN][1000 genomes]
rs3814860	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4899277	0.95[ASN][1000 genomes]
rs4899278	0.95[ASN][1000 genomes]
rs4899291	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902569	0.85[CHB][hapmap]
rs4902570	0.85[CHB][hapmap]
rs4902622	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs4902636	0.82[ASN][1000 genomes]
rs4902637	0.82[ASN][1000 genomes]
rs4902648	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4902676	0.82[ASN][1000 genomes]
rs4902692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71407788	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs71407789	0.82[ASN][1000 genomes]
rs7140983	0.81[ASN][1000 genomes]
rs7148150	0.81[CHB][hapmap]
rs7148377	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7152341	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7158709	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7161403	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs719455	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs72675487	0.81[ASN][1000 genomes]
rs8003397	0.82[ASN][1000 genomes]
rs8003621	0.81[ASN][1000 genomes]
rs8004716	0.81[CHB][hapmap]
rs8006321	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8020250	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs910370	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs910371	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39939000-39946000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:39939000-39954600	Weak transcription	Brain Hippocampus Middle	brain

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