Variant report

Variant	rs1950334
Chromosome Location	chr14:39961735-39961736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTAGE5-1	chr14:39961459-39962715	XLOC_010811
2	lnc-CTAGE5-1	chr14:39961459-39961950	XLOC_010811
3	lnc-CTAGE5-1	chr14:39961459-39962715	XLOC_010811
4	lnc-CTAGE5-1	chr14:39961459-39961760	ENSG00000258526
5	lnc-CTAGE5-1	chr14:39961459-39961760	ENSG00000258526
6	lnc-CTAGE5-1	chr14:39961459-39961974	ENSG00000258526
7	lnc-CTAGE5-1	chr14:39961459-39961973	NONHSAT036548
8	lnc-CTAGE5-1	chr14:39961459-39962715	XLOC_010811

No data

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10137905	0.82[CHB][hapmap]
rs11157067	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11847057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587625	0.93[AFR][1000 genomes]
rs12588110	0.93[AFR][1000 genomes]
rs12588175	0.91[AFR][1000 genomes]
rs12588483	0.94[AFR][1000 genomes]
rs12589427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12590172	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12880644	0.93[AFR][1000 genomes]
rs12884747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12886696	0.84[ASN][1000 genomes]
rs12886769	0.87[AFR][1000 genomes]
rs12894147	0.94[ASN][1000 genomes]
rs12894855	0.83[CHB][hapmap]
rs12896502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1304254	0.87[ASN][1000 genomes]
rs17109296	0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs17109300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17109328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807940	0.84[ASN][1000 genomes]
rs1950329	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1950330	0.83[ASN][1000 genomes]
rs1950331	0.82[ASN][1000 genomes]
rs1950333	0.82[ASN][1000 genomes]
rs1950335	0.84[ASN][1000 genomes]
rs1950336	0.96[AFR][1000 genomes]
rs1950338	0.95[AFR][1000 genomes]
rs1955718	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1955726	0.82[ASN][1000 genomes]
rs1955729	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2057137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2057139	0.98[ASN][1000 genomes]
rs2207291	0.95[AFR][1000 genomes]
rs2207293	0.84[ASN][1000 genomes]
rs2274395	0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2274396	0.82[CHB][hapmap]
rs2415549	0.93[AFR][1000 genomes]
rs2415550	0.96[AFR][1000 genomes]
rs2899889	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34432449	0.92[ASN][1000 genomes]
rs34649642	0.94[AFR][1000 genomes]
rs34687394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35459433	0.93[AFR][1000 genomes]
rs35553183	0.93[AFR][1000 genomes]
rs35643160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35693868	0.91[AFR][1000 genomes]
rs35708308	0.82[ASN][1000 genomes]
rs35923045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36010374	0.96[AFR][1000 genomes]
rs3814860	0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4899277	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4899278	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4899287	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4899291	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902569	0.82[CHB][hapmap]
rs4902570	0.82[CHB][hapmap]
rs4902622	0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4902636	0.94[AFR][1000 genomes]
rs4902637	0.94[AFR][1000 genomes]
rs4902648	0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4902665	0.93[AFR][1000 genomes]
rs4902676	0.95[AFR][1000 genomes]
rs4902692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56046902	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs71407788	0.83[AFR][1000 genomes]
rs71407789	0.95[AFR][1000 genomes]
rs7140983	0.87[AFR][1000 genomes]
rs7148377	0.82[JPT][hapmap]
rs7152341	0.82[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7152935	0.95[AFR][1000 genomes]
rs7158709	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7161403	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs718364	0.81[JPT][hapmap]
rs719455	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs72675487	0.93[AFR][1000 genomes]
rs8003397	0.94[AFR][1000 genomes]
rs8003621	0.90[AFR][1000 genomes]
rs8006123	0.93[AFR][1000 genomes]
rs8006321	0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs8020250	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910370	0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs910371	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv456212	chr14:39957437-40096888	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv564418	chr14:39957437-40096888	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39958200-39964800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:39958200-39968600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:39960200-39961800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:39960200-39962000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:39960400-39961800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:39960400-39961800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:39960400-39961800	Enhancers	HSMM	muscle
8	chr14:39960400-39962000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:39960600-39961800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:39960600-39961800	Enhancers	Brain Anterior Caudate	brain
11	chr14:39960600-39961800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr14:39960600-39962000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:39960600-39962000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:39960600-39962000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:39960600-39962000	Enhancers	NHDF-Ad	bronchial
16	chr14:39960800-39961800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:39960800-39961800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr14:39961000-39962000	Enhancers	Osteobl	bone
19	chr14:39961200-39962000	Enhancers	NH-A	brain
20	chr14:39961400-39966400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:39961600-39961800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr14:39961600-39961800	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:39961600-39962600	Weak transcription	Fetal Heart	heart

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