Variant report

Variant	rs67963654
Chromosome Location	chr14:39851812-39851813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39837819..39839330-chr14:39849580..39852012,2	MCF-7	breast:
2	chr14:39839625..39841702-chr14:39850583..39853034,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271424	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10137905	0.81[EUR][1000 genomes]
rs10148740	0.83[EUR][1000 genomes]
rs10149352	0.83[EUR][1000 genomes]
rs12232110	0.89[ASN][1000 genomes]
rs12587625	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12588110	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12588175	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12588483	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12590172	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12880644	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12882250	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12886769	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12887525	0.82[EUR][1000 genomes]
rs12894855	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12897960	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1950336	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1950338	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2104531	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2207291	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2274395	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2274396	0.83[EUR][1000 genomes]
rs2415549	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2415550	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34432449	0.89[AMR][1000 genomes]
rs34589600	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34649642	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34894621	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34928332	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35115885	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35459433	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35553183	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35693868	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35876588	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35904659	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36010374	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36057593	0.83[EUR][1000 genomes]
rs3814860	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4899245	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4899277	0.89[AMR][1000 genomes]
rs4899278	0.89[AMR][1000 genomes]
rs4902569	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902570	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902598	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4902599	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4902622	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4902636	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4902637	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4902648	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4902665	0.85[ASN][1000 genomes]
rs4902676	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56046902	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56375627	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57781286	0.83[EUR][1000 genomes]
rs6571926	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67439322	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71407788	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs71407789	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7140983	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7144848	0.80[EUR][1000 genomes]
rs7145821	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7152341	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7152935	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7153413	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7161403	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72675487	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8003397	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8003621	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8006123	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8006321	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8007252	0.84[EUR][1000 genomes]
rs8014123	0.81[EUR][1000 genomes]
rs910370	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs910371	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9332387	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39770800-39872400	Weak transcription	Colonic Mucosa	Colon
2	chr14:39818800-39867200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:39835400-39872400	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:39836200-39872800	Weak transcription	Esophagus	oesophagus
5	chr14:39836400-39870600	Weak transcription	Gastric	stomach
6	chr14:39836600-39852600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:39837000-39852600	Weak transcription	Primary T cells from cord blood	blood
8	chr14:39840000-39852600	Weak transcription	Thymus	Thymus
9	chr14:39840000-39855000	Weak transcription	Fetal Stomach	stomach
10	chr14:39840000-39856000	Weak transcription	Fetal Intestine Small	intestine
11	chr14:39840000-39863200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr14:39840000-39863400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:39840000-39864000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:39840000-39867000	Weak transcription	Left Ventricle	heart
15	chr14:39840000-39867400	Weak transcription	Pancreas	Pancrea
16	chr14:39840000-39882600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:39840200-39852200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:39840200-39867200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:39840600-39864400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr14:39841000-39865800	Weak transcription	Primary B cells from cord blood	blood
21	chr14:39841200-39867000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:39841400-39862800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr14:39846200-39864800	Weak transcription	NHEK	skin
24	chr14:39846200-39878800	Weak transcription	Right Ventricle	heart
25	chr14:39846400-39857200	Weak transcription	Liver	Liver
26	chr14:39846400-39862400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:39846400-39864600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:39846400-39867200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:39846600-39862600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:39846600-39864600	Weak transcription	HepG2	liver
31	chr14:39846600-39864600	Weak transcription	NH-A	brain
32	chr14:39846600-39864800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:39846600-39866600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr14:39846800-39862600	Weak transcription	Adipose Nuclei	Adipose
35	chr14:39846800-39872400	Weak transcription	HSMMtube	muscle
36	chr14:39848000-39862600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:39850400-39870800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:39850800-39852000	Enhancers	Fetal Thymus	thymus
39	chr14:39851000-39866800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:39851200-39853200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:39851200-39866000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:39851200-39868600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr14:39851400-39852600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:39851400-39853200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr14:39851400-39854600	Weak transcription	Aorta	Aorta
46	chr14:39851400-39868600	Weak transcription	Brain Hippocampus Middle	brain
47	chr14:39851400-39868600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr14:39851600-39852000	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr14:39851600-39852800	Enhancers	Dnd41	blood
50	chr14:39851600-39853000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links