Variant report

Variant	rs10149352
Chromosome Location	chr14:39802575-39802576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10130008	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10133417	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10137052	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10137352	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10137905	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148574	0.98[ASN][1000 genomes]
rs10148740	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11157058	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11157061	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11620695	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11624144	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11624839	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11626679	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12588386	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12880609	0.91[ASN][1000 genomes]
rs12883781	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12887525	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894855	0.83[EUR][1000 genomes]
rs12896838	0.85[ASN][1000 genomes]
rs12897272	0.84[ASN][1000 genomes]
rs17109100	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2104531	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2274396	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2274399	0.85[ASN][1000 genomes]
rs34589600	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34894621	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34928332	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35115885	0.83[EUR][1000 genomes]
rs35876588	0.82[EUR][1000 genomes]
rs35904659	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36057593	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902528	0.80[ASN][1000 genomes]
rs4902569	0.81[EUR][1000 genomes]
rs4902570	0.81[EUR][1000 genomes]
rs56375627	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57781286	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6571926	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67439322	0.83[EUR][1000 genomes]
rs67963654	0.83[EUR][1000 genomes]
rs7144848	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7145821	0.83[EUR][1000 genomes]
rs7148150	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7151835	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8004716	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8007252	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8014123	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs956108	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9671943	0.83[ASN][1000 genomes]
rs9671953	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39738200-39813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:39752600-39808200	Weak transcription	Stomach Mucosa	stomach
3	chr14:39756200-39828400	Weak transcription	Brain Germinal Matrix	brain
4	chr14:39756600-39819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:39757400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:39764600-39808200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:39764600-39818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:39764800-39805200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:39765600-39803800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:39765600-39807800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:39767200-39833800	Weak transcription	Small Intestine	intestine
12	chr14:39769800-39808000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:39770000-39816400	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:39770600-39819800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:39770800-39872400	Weak transcription	Colonic Mucosa	Colon
16	chr14:39772600-39808000	Weak transcription	Fetal Heart	heart
17	chr14:39782800-39808000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:39786600-39828600	Weak transcription	Spleen	Spleen
19	chr14:39786800-39808000	Weak transcription	K562	blood
20	chr14:39786800-39823000	Strong transcription	Liver	Liver
21	chr14:39789400-39809600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr14:39791600-39804800	Weak transcription	Fetal Brain Female	brain
23	chr14:39792600-39813800	Weak transcription	NHDF-Ad	bronchial
24	chr14:39792800-39841600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:39793000-39822200	Weak transcription	Fetal Lung	lung
26	chr14:39794400-39843200	Weak transcription	HUVEC	blood vessel
27	chr14:39796000-39810200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr14:39796400-39817800	Weak transcription	HSMMtube	muscle
29	chr14:39796400-39828400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:39796600-39806600	Weak transcription	Brain Anterior Caudate	brain
31	chr14:39796800-39808000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:39796800-39811800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr14:39797000-39837400	Weak transcription	Brain Substantia Nigra	brain
34	chr14:39797200-39815000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:39797600-39816000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:39798200-39803400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:39799000-39810800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:39799200-39803000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr14:39799200-39809800	Strong transcription	Primary T cells from cord blood	blood
40	chr14:39799400-39803200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:39799400-39810800	Strong transcription	HepG2	liver
42	chr14:39799400-39811000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:39799600-39803200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:39799600-39811000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr14:39799800-39803200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr14:39799800-39808200	Strong transcription	Fetal Intestine Large	intestine
47	chr14:39800000-39803200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:39800000-39809200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr14:39800200-39803200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr14:39800600-39803400	Strong transcription	Duodenum Smooth Muscle	Duodenum

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