Variant report

Variant	rs956108
Chromosome Location	chr14:39763111-39763112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39763084..39765244-chr14:39767699..39769276,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10130008	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10133417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137052	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137352	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10137905	0.85[ASN][1000 genomes]
rs10138024	0.86[ASN][1000 genomes]
rs10148574	0.83[ASN][1000 genomes]
rs10148740	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10149352	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10151659	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10162550	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1040810	0.86[ASN][1000 genomes]
rs10872920	0.82[ASN][1000 genomes]
rs11157053	0.88[ASN][1000 genomes]
rs11157054	0.88[ASN][1000 genomes]
rs11157057	0.81[ASN][1000 genomes]
rs11157058	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11620695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11621264	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11624144	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11624839	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11626679	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11627580	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12432397	0.87[ASN][1000 genomes]
rs12587713	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12588386	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12588728	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12880609	0.86[ASN][1000 genomes]
rs12883781	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12887525	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12892482	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12896838	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570132	0.88[ASN][1000 genomes]
rs1594842	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109073	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17109100	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2082635	0.82[ASN][1000 genomes]
rs2274396	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2274399	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626340	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35065854	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35184650	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35201135	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36057593	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57781286	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7144848	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7148150	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7150735	0.84[EUR][1000 genomes]
rs7151835	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8004348	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8004716	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8007252	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8009651	0.81[ASN][1000 genomes]
rs8014123	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8018717	0.88[ASN][1000 genomes]
rs956109	0.88[ASN][1000 genomes]
rs9671943	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9671953	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv977461	chr14:39762414-39770640	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39737800-39763800	Weak transcription	Gastric	stomach
2	chr14:39738000-39763800	Weak transcription	HSMM	muscle
3	chr14:39738200-39763800	Weak transcription	Brain Angular Gyrus	brain
4	chr14:39738200-39763800	Weak transcription	HSMMtube	muscle
5	chr14:39738200-39766200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:39738200-39813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:39738600-39763800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:39738800-39764800	Weak transcription	NHDF-Ad	bronchial
9	chr14:39739200-39764000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:39739800-39763400	Weak transcription	Lung	lung
11	chr14:39739800-39766400	Weak transcription	Aorta	Aorta
12	chr14:39741200-39764200	Weak transcription	Spleen	Spleen
13	chr14:39742000-39763400	Weak transcription	Esophagus	oesophagus
14	chr14:39744600-39769800	Weak transcription	Pancreas	Pancrea
15	chr14:39745400-39764000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:39745600-39764000	Weak transcription	HMEC	breast
17	chr14:39746200-39776600	Weak transcription	K562	blood
18	chr14:39746400-39771200	Weak transcription	Fetal Heart	heart
19	chr14:39747200-39763800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:39747800-39763600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:39749400-39763400	Weak transcription	Left Ventricle	heart
22	chr14:39749400-39763800	Weak transcription	Small Intestine	intestine
23	chr14:39749400-39764000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:39749400-39764200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:39749400-39766400	Weak transcription	Right Ventricle	heart
26	chr14:39749400-39785400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:39749600-39763400	Weak transcription	Placenta	Placenta
28	chr14:39749600-39763800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr14:39749600-39763800	Weak transcription	Brain Substantia Nigra	brain
30	chr14:39749600-39765200	Weak transcription	HUVEC	blood vessel
31	chr14:39749600-39771200	Weak transcription	Fetal Kidney	kidney
32	chr14:39752200-39763800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr14:39752400-39763200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr14:39752400-39763600	Weak transcription	GM12878-XiMat	blood
35	chr14:39752400-39763800	Weak transcription	Brain Anterior Caudate	brain
36	chr14:39752600-39763800	Weak transcription	Fetal Lung	lung
37	chr14:39752600-39764200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr14:39752600-39764200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:39752600-39769000	Weak transcription	Colon Smooth Muscle	Colon
40	chr14:39752600-39808200	Weak transcription	Stomach Mucosa	stomach
41	chr14:39753000-39764200	Weak transcription	A549	lung
42	chr14:39755400-39775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr14:39755400-39783400	Strong transcription	Liver	Liver
44	chr14:39755600-39767600	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr14:39755600-39780400	Strong transcription	HepG2	liver
46	chr14:39755600-39797200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr14:39756000-39763600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:39756000-39764000	Weak transcription	Brain Hippocampus Middle	brain
49	chr14:39756000-39764600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:39756000-39788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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