Variant report

Variant	rs35184650
Chromosome Location	chr14:39733748-39733749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:39733716-39734573	MCF10A-Er-Src	breast:	n/a	n/a
2	E2F4	chr14:39733595-39733761	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr14:39733729-39734079	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39642546..39647225-chr14:39733415..39737853,13	MCF-7	breast:
2	chr14:39570644..39573336-chr14:39733309..39737125,4	MCF-7	breast:

Variant related genes	Relation type
CTAGE5	TF binding region
ENSG00000258941	TF binding region
ENSG00000258651	Chromatin interaction
ENSG00000100934	Chromatin interaction
ENSG00000259083	Chromatin interaction
ENSG00000100941	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10131617	0.92[ASN][1000 genomes]
rs10133417	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10134143	0.87[ASN][1000 genomes]
rs10134365	0.93[ASN][1000 genomes]
rs10138024	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10151659	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162550	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620695	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11621264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11621330	0.88[ASN][1000 genomes]
rs11621822	0.88[ASN][1000 genomes]
rs11624839	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11626150	0.87[ASN][1000 genomes]
rs11627580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11628075	0.86[ASN][1000 genomes]
rs11845046	0.89[ASN][1000 genomes]
rs12587713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588386	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12588728	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12589831	0.88[ASN][1000 genomes]
rs12882709	0.88[ASN][1000 genomes]
rs12883781	0.80[ASN][1000 genomes]
rs12892482	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12894960	0.82[ASN][1000 genomes]
rs12896838	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1594842	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109021	0.88[ASN][1000 genomes]
rs17109028	0.88[ASN][1000 genomes]
rs17109056	0.89[ASN][1000 genomes]
rs17109073	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17109100	0.80[ASN][1000 genomes]
rs1897792	0.88[ASN][1000 genomes]
rs2274399	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28626340	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28680827	0.86[ASN][1000 genomes]
rs35065854	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35201135	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35613410	0.88[ASN][1000 genomes]
rs7143646	0.87[ASN][1000 genomes]
rs7150735	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8004348	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs956108	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9671943	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9671953	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39728400-39734400	Weak transcription	Fetal Intestine Large	intestine
4	chr14:39728600-39734000	Weak transcription	HepG2	liver
5	chr14:39728600-39735600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:39729200-39734600	Weak transcription	Fetal Intestine Small	intestine
7	chr14:39732400-39734000	Weak transcription	Fetal Heart	heart
8	chr14:39733600-39733800	Weak transcription	Liver	Liver

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