Variant report

Variant	rs12589831
Chromosome Location	chr14:39708578-39708579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39708069..39709628-chr14:39711747..39713367,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10131617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10133417	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10134143	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10134365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10137352	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10137905	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10138024	0.80[ASN][1000 genomes]
rs10138869	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10151659	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10162550	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10872920	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11157053	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs11157058	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11620695	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11621264	0.84[ASN][1000 genomes]
rs11621330	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11621822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626150	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626679	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs11627580	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11628075	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11845046	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12434140	0.90[JPT][hapmap]
rs12587713	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12588728	0.85[ASN][1000 genomes]
rs12590172	0.80[JPT][hapmap]
rs12882709	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12892482	0.84[ASN][1000 genomes]
rs12894855	0.86[JPT][hapmap]
rs12894960	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1594842	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs17109021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17109028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17109056	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17109073	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1897792	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1950952	0.90[JPT][hapmap]
rs1998194	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2082635	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2274395	0.85[JPT][hapmap]
rs2274396	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2274399	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs28626340	0.86[ASN][1000 genomes]
rs28680827	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35065854	0.83[ASN][1000 genomes]
rs35184650	0.88[ASN][1000 genomes]
rs35201135	0.88[ASN][1000 genomes]
rs35613410	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35627131	0.85[ASN][1000 genomes]
rs35691623	0.82[ASN][1000 genomes]
rs3814860	0.85[JPT][hapmap]
rs4902528	0.85[JPT][hapmap]
rs4902569	0.90[JPT][hapmap]
rs4902570	0.90[JPT][hapmap]
rs4902622	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs6571919	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7140164	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7143646	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148150	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7150735	0.84[ASN][1000 genomes]
rs7152341	0.86[JPT][hapmap]
rs7153482	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7161403	0.81[JPT][hapmap]
rs8004348	0.83[ASN][1000 genomes]
rs8004716	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs8006321	0.85[JPT][hapmap]
rs8018717	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs956109	0.91[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39706200-39715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:39706400-39708600	Weak transcription	Fetal Intestine Large	intestine
5	chr14:39706600-39708800	Strong transcription	Fetal Intestine Small	intestine
6	chr14:39707800-39708800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:39708400-39708600	Genic enhancers	Liver	Liver
8	chr14:39708400-39708800	Strong transcription	HepG2	liver

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