Variant report

Variant	rs11628075
Chromosome Location	chr14:39705010-39705011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39698773..39700516-chr14:39704009..39706576,2	K562	blood:
2	chr14:39703653..39705206-chr14:39735472..39737859,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150527	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000150526	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10131617	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10134143	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10134365	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10151659	0.86[ASN][1000 genomes]
rs10162550	0.86[ASN][1000 genomes]
rs11621264	0.81[ASN][1000 genomes]
rs11621822	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11626150	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11627580	0.86[ASN][1000 genomes]
rs11845046	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12587713	0.86[ASN][1000 genomes]
rs12588728	0.82[ASN][1000 genomes]
rs12589831	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12882709	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12892482	0.81[ASN][1000 genomes]
rs12894960	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1594842	0.86[ASN][1000 genomes]
rs17109021	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17109028	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17109056	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17109073	0.86[ASN][1000 genomes]
rs1897792	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998194	0.84[ASN][1000 genomes]
rs28626340	0.84[ASN][1000 genomes]
rs28680827	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35065854	0.81[ASN][1000 genomes]
rs35184650	0.86[ASN][1000 genomes]
rs35201135	0.85[ASN][1000 genomes]
rs35613410	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35627131	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35691623	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7143646	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7150735	0.81[ASN][1000 genomes]
rs8004348	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv84871	chr14:39698400-39707997	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39702800-39705200	Active TSS	Liver	Liver
3	chr14:39703000-39705400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr14:39703000-39706400	Active TSS	Fetal Intestine Large	intestine
5	chr14:39703000-39706400	Active TSS	Fetal Intestine Small	intestine
6	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
7	chr14:39704000-39705200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:39704000-39708000	Weak transcription	A549	lung
9	chr14:39704200-39705200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:39704800-39705200	Enhancers	HepG2	liver
12	chr14:39705000-39707800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links