Variant report

Variant	rs1897792
Chromosome Location	chr14:39697568-39697569
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr14:39697357-39697598	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39695180..39697611-chr14:39735676..39737313,2	MCF-7	breast:

Variant related genes	Relation type
MIA2	TF binding region
ENSG00000150527	Chromatin interaction
ENSG00000258940	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10131617	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10133417	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10134143	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10134365	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10137352	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10137905	0.82[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs10138869	0.95[JPT][hapmap]
rs10151659	0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs10162550	0.82[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs10872920	0.91[JPT][hapmap]
rs11157053	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs11157058	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs11620695	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11621264	0.83[ASN][1000 genomes]
rs11621330	0.91[JPT][hapmap]
rs11621822	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626150	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626679	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs11627580	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11628075	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11845046	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434140	0.91[JPT][hapmap]
rs12587713	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12588728	0.84[ASN][1000 genomes]
rs12589831	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12882709	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12892482	0.83[ASN][1000 genomes]
rs12894855	0.86[JPT][hapmap]
rs12894960	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1594842	0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs17109021	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109028	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109056	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17109073	0.82[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs1950952	0.91[JPT][hapmap]
rs1998194	0.86[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2082635	0.91[JPT][hapmap]
rs2274395	0.81[JPT][hapmap]
rs2274396	0.82[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs2274399	0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]
rs28626340	0.86[ASN][1000 genomes]
rs28680827	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35065854	0.83[ASN][1000 genomes]
rs35184650	0.88[ASN][1000 genomes]
rs35201135	0.87[ASN][1000 genomes]
rs35613410	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627131	0.86[ASN][1000 genomes]
rs35691623	0.83[ASN][1000 genomes]
rs3814860	0.81[JPT][hapmap]
rs4902528	0.86[JPT][hapmap]
rs4902569	0.86[JPT][hapmap]
rs4902570	0.86[JPT][hapmap]
rs4902622	0.81[JPT][hapmap]
rs6571919	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7140164	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7143646	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148150	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7150735	0.83[ASN][1000 genomes]
rs7152341	0.81[JPT][hapmap]
rs7153482	0.95[JPT][hapmap]
rs8004348	0.82[ASN][1000 genomes]
rs8004716	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs8006321	0.81[JPT][hapmap]
rs8018717	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs956109	0.82[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv977619	chr14:39690884-39697666	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39696400-39698800	Enhancers	Fetal Intestine Large	intestine
3	chr14:39696600-39699200	Enhancers	Fetal Intestine Small	intestine
4	chr14:39696600-39700600	Enhancers	HepG2	liver
5	chr14:39696800-39702400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr14:39697000-39702600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:39697200-39699000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:39697200-39699400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:39697200-39699400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr14:39697200-39699400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr14:39697200-39699400	Enhancers	NH-A	brain
12	chr14:39697200-39701200	Enhancers	K562	blood
13	chr14:39697400-39698200	Enhancers	Stomach Mucosa	stomach
14	chr14:39697400-39699000	Enhancers	Primary T cells from cord blood	blood
15	chr14:39697400-39699400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr14:39697400-39699400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr14:39697400-39699400	Enhancers	Primary T helper cells fromperipheralblood	blood

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