Variant report

Variant	rs11845046
Chromosome Location	chr14:39716201-39716202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39709841..39712776-chr14:39715835..39718278,2	K562	blood:
2	chr14:39687884..39690002-chr14:39715235..39717332,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10131617	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10133417	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10134143	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10134365	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10137352	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10137905	0.90[ASW][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap]
rs10138024	0.81[ASN][1000 genomes]
rs10138869	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10151659	0.91[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs10162550	0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10872920	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11157053	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11157058	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11620695	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11621264	0.85[ASN][1000 genomes]
rs11621330	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11621822	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626150	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626679	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs11627580	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11628075	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12434140	0.86[JPT][hapmap]
rs12587713	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12588728	0.85[ASN][1000 genomes]
rs12589831	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12882709	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12892482	0.85[ASN][1000 genomes]
rs12894855	0.82[JPT][hapmap]
rs12894960	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1594842	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs17109021	0.90[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17109028	0.94[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17109056	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109073	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1897792	0.94[CEU][hapmap];0.87[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1950952	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1998194	0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2082635	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2274396	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs2274399	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap]
rs28626340	0.87[ASN][1000 genomes]
rs28680827	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35065854	0.85[ASN][1000 genomes]
rs35184650	0.89[ASN][1000 genomes]
rs35201135	0.90[ASN][1000 genomes]
rs35613410	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35627131	0.83[ASN][1000 genomes]
rs35691623	0.80[ASN][1000 genomes]
rs4902528	0.82[JPT][hapmap]
rs4902569	0.81[JPT][hapmap]
rs4902570	0.81[JPT][hapmap]
rs6571919	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7140164	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs7143646	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148150	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7150735	0.85[ASN][1000 genomes]
rs7153482	0.91[JPT][hapmap]
rs8004348	0.85[ASN][1000 genomes]
rs8004716	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs8018717	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs956109	0.87[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39708800-39718000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:39710000-39717400	Strong transcription	HepG2	liver
5	chr14:39711200-39719400	Strong transcription	Liver	Liver
6	chr14:39715600-39717200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:39715600-39717200	Enhancers	NHDF-Ad	bronchial
8	chr14:39715800-39716600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:39715800-39716800	Strong transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:39715800-39717000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:39715800-39717000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:39715800-39717200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:39716000-39717000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:39716000-39717000	Enhancers	HMEC	breast
15	chr14:39716000-39717200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:39716000-39717200	Strong transcription	Fetal Intestine Large	intestine
17	chr14:39716000-39717200	Enhancers	NHEK	skin
18	chr14:39716000-39718000	Weak transcription	Fetal Intestine Small	intestine
19	chr14:39716200-39716600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:39716200-39716600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:39716200-39716600	Flanking Active TSS	Osteobl	bone
22	chr14:39716200-39717000	Enhancers	HSMM	muscle
23	chr14:39716200-39717000	Enhancers	HSMMtube	muscle
24	chr14:39716200-39717000	Enhancers	NH-A	brain
25	chr14:39716200-39717000	Enhancers	NHLF	lung

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