Variant report

Variant	rs8004348
Chromosome Location	chr14:39733058-39733059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10131617	0.88[ASN][1000 genomes]
rs10133417	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10134143	0.81[ASN][1000 genomes]
rs10134365	0.87[ASN][1000 genomes]
rs10138024	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10151659	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10162550	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11620695	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11621264	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11621330	0.84[ASN][1000 genomes]
rs11621822	0.82[ASN][1000 genomes]
rs11624839	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11626150	0.81[ASN][1000 genomes]
rs11627580	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11628075	0.80[ASN][1000 genomes]
rs11845046	0.85[ASN][1000 genomes]
rs12587713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12588386	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12588728	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12589831	0.83[ASN][1000 genomes]
rs12882709	0.82[ASN][1000 genomes]
rs12892482	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12896838	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1594842	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17109021	0.82[ASN][1000 genomes]
rs17109028	0.82[ASN][1000 genomes]
rs17109056	0.85[ASN][1000 genomes]
rs17109073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1897792	0.82[ASN][1000 genomes]
rs2274399	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28626340	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28680827	0.81[ASN][1000 genomes]
rs35065854	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35184650	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35201135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35613410	0.82[ASN][1000 genomes]
rs7143646	0.81[ASN][1000 genomes]
rs7150735	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs956108	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9671943	0.82[EUR][1000 genomes]
rs9671953	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39726200-39733200	Weak transcription	Liver	Liver
4	chr14:39728400-39734400	Weak transcription	Fetal Intestine Large	intestine
5	chr14:39728600-39734000	Weak transcription	HepG2	liver
6	chr14:39728600-39735600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:39729200-39734600	Weak transcription	Fetal Intestine Small	intestine
8	chr14:39732400-39734000	Weak transcription	Fetal Heart	heart

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