Variant report

Variant	rs11621264
Chromosome Location	chr14:39728208-39728209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39726621..39728272-chr14:39736030..39737881,2	K562	blood:

Variant related genes	Relation type
ENSG00000258940	Chromatin interaction
ENSG00000150527	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10131617	0.88[ASN][1000 genomes]
rs10133417	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10134143	0.83[ASN][1000 genomes]
rs10134365	0.88[ASN][1000 genomes]
rs10138024	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10151659	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10162550	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11620695	0.82[EUR][1000 genomes]
rs11621330	0.83[ASN][1000 genomes]
rs11621822	0.83[ASN][1000 genomes]
rs11624839	0.82[EUR][1000 genomes]
rs11626150	0.83[ASN][1000 genomes]
rs11627580	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11628075	0.81[ASN][1000 genomes]
rs11845046	0.85[ASN][1000 genomes]
rs12587713	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12588386	0.82[EUR][1000 genomes]
rs12588728	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12589831	0.84[ASN][1000 genomes]
rs12882709	0.83[ASN][1000 genomes]
rs12892482	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12894960	0.81[ASN][1000 genomes]
rs12896838	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1594842	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17109021	0.83[ASN][1000 genomes]
rs17109028	0.83[ASN][1000 genomes]
rs17109056	0.85[ASN][1000 genomes]
rs17109073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1897792	0.83[ASN][1000 genomes]
rs2274399	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28626340	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28680827	0.82[ASN][1000 genomes]
rs35065854	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35184650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35201135	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35613410	0.83[ASN][1000 genomes]
rs7143646	0.83[ASN][1000 genomes]
rs7150735	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8004348	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs956108	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9671943	0.82[EUR][1000 genomes]
rs9671953	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39726200-39733200	Weak transcription	Liver	Liver
4	chr14:39727400-39728600	Enhancers	HepG2	liver
5	chr14:39728000-39728400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:39728000-39728400	Strong transcription	Fetal Intestine Large	intestine
7	chr14:39728000-39728600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:39728000-39729200	Strong transcription	Fetal Intestine Small	intestine

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