Variant report

Variant	rs35691623
Chromosome Location	chr14:39701732-39701733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39571162..39573957-chr14:39700069..39703541,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100934	Chromatin interaction
ENSG00000258651	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10134143	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11621822	0.83[ASN][1000 genomes]
rs11626150	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11628075	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11845046	0.80[ASN][1000 genomes]
rs12589831	0.82[ASN][1000 genomes]
rs12882709	0.83[ASN][1000 genomes]
rs12894960	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17109021	0.83[ASN][1000 genomes]
rs17109028	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17109056	0.80[ASN][1000 genomes]
rs1897792	0.83[ASN][1000 genomes]
rs28680827	0.82[ASN][1000 genomes]
rs35613410	0.83[ASN][1000 genomes]
rs35627131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7143646	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv84871	chr14:39698400-39707997	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39696800-39702400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr14:39697000-39702600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:39698200-39702000	Weak transcription	Stomach Mucosa	stomach
5	chr14:39698800-39702200	Weak transcription	Osteobl	bone
6	chr14:39699000-39702200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:39699200-39702400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr14:39699200-39702400	Weak transcription	NHEK	skin
9	chr14:39699400-39702000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:39699400-39702200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:39699400-39702200	Weak transcription	NH-A	brain
12	chr14:39699400-39702400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr14:39699400-39703200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:39699800-39702400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:39699800-39702400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:39700600-39702800	Enhancers	Liver	Liver
17	chr14:39700600-39702800	Enhancers	Fetal Intestine Small	intestine
18	chr14:39700800-39702000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:39701000-39702000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:39701000-39702200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:39701000-39702200	Weak transcription	HSMMtube	muscle
22	chr14:39701000-39702600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr14:39701000-39703000	Enhancers	Fetal Intestine Large	intestine
24	chr14:39701200-39702200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr14:39701200-39702200	Weak transcription	A549	lung
26	chr14:39701200-39702200	Active TSS	HepG2	liver
27	chr14:39701200-39702400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links