Variant report

Variant	rs12884903
Chromosome Location	chr14:65179257-65179258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10138034	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11621159	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11621379	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11622754	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11625500	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11628301	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12883289	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12892852	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12895353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1553163	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170683	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs170685	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17767074	0.83[AMR][1000 genomes]
rs229622	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs229645	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs229649	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs229653	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs229656	0.90[EUR][1000 genomes]
rs34340219	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7140781	0.88[EUR][1000 genomes]
rs71420472	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs732311	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943995	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1035833	chr14:65176371-65246181	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65175200-65181000	Weak transcription	Hela-S3	cervix
2	chr14:65175200-65181800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:65176000-65180000	Weak transcription	Fetal Kidney	kidney
4	chr14:65176000-65186400	Weak transcription	Osteobl	bone
5	chr14:65176200-65180400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:65176200-65181400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:65176200-65182000	Weak transcription	Colonic Mucosa	Colon
8	chr14:65176400-65179400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65176400-65181200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:65176400-65181400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:65176400-65181800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:65176400-65182000	Weak transcription	Stomach Mucosa	stomach
13	chr14:65176800-65181400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:65176800-65181600	Weak transcription	Esophagus	oesophagus
15	chr14:65176800-65182000	Weak transcription	Gastric	stomach
16	chr14:65177000-65179600	Weak transcription	Fetal Intestine Large	intestine
17	chr14:65177000-65180200	Weak transcription	HMEC	breast
18	chr14:65177000-65180800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:65177000-65181400	Weak transcription	Pancreas	Pancrea
20	chr14:65177000-65181800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr14:65177000-65189200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:65177200-65181400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:65177200-65183400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr14:65177400-65180800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:65177600-65180600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:65177600-65181400	Weak transcription	Aorta	Aorta
27	chr14:65177800-65181200	Weak transcription	Placenta	Placenta
28	chr14:65178000-65179400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr14:65178000-65179400	Weak transcription	Fetal Muscle Leg	muscle
30	chr14:65178000-65180800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:65178000-65180800	Weak transcription	Brain Angular Gyrus	brain
32	chr14:65178000-65181400	Weak transcription	Left Ventricle	heart
33	chr14:65178000-65181400	Weak transcription	Lung	lung
34	chr14:65178000-65181400	Weak transcription	Right Atrium	heart
35	chr14:65178000-65181600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:65178000-65181800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr14:65178000-65182000	Weak transcription	Ovary	ovary
38	chr14:65178000-65182000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr14:65178200-65179400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:65178200-65179600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr14:65178200-65180200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr14:65178200-65180800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr14:65178200-65181000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:65178200-65181000	Weak transcription	NHEK	skin
45	chr14:65178200-65181200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr14:65178200-65181400	Weak transcription	Fetal Intestine Small	intestine
47	chr14:65178200-65181800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:65178200-65182000	Weak transcription	Fetal Stomach	stomach
49	chr14:65178200-65182000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr14:65178200-65182000	Weak transcription	Stomach Smooth Muscle	stomach

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