Variant report

Variant	rs732311
Chromosome Location	chr14:65176569-65176570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65168373..65176902-chr14:65220182..65231670,21	MCF-7	breast:
2	chr14:65168529..65178400-chr14:65179583..65195815,52	MCF-7	breast:
3	chr14:65168335..65178043-chr14:65220677..65234710,31	MCF-7	breast:
4	chr14:65139588..65142521-chr14:65175762..65178559,2	MCF-7	breast:
5	chr14:65173952..65176818-chr14:65213044..65215895,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction
ENSG00000070182	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10138034	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11621159	0.82[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621379	0.92[EUR][1000 genomes]
rs11622754	0.82[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11625500	0.82[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628301	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883289	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884903	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12892852	0.82[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12895353	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553163	0.82[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170683	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs170685	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767074	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs229622	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229645	0.98[EUR][1000 genomes]
rs229648	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs229649	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229653	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229656	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34340219	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140781	0.82[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71420472	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943995	0.82[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1035833	chr14:65176371-65246181	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65170000-65176600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
2	chr14:65171800-65177200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr14:65172400-65176800	Enhancers	Small Intestine	intestine
4	chr14:65172800-65178000	Enhancers	Fetal Heart	heart
5	chr14:65173000-65177000	Enhancers	Pancreas	Pancrea
6	chr14:65173000-65177000	Enhancers	Right Atrium	heart
7	chr14:65173000-65177600	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr14:65173200-65177000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:65173200-65178000	Enhancers	Spleen	Spleen
10	chr14:65173400-65178000	Enhancers	Adipose Nuclei	Adipose
11	chr14:65173800-65176800	Enhancers	Esophagus	oesophagus
12	chr14:65173800-65178000	Enhancers	Ovary	ovary
13	chr14:65173800-65179000	Enhancers	Liver	Liver
14	chr14:65174400-65176800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:65174400-65178000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr14:65174600-65176800	Enhancers	Gastric	stomach
17	chr14:65174600-65177000	Weak transcription	Aorta	Aorta
18	chr14:65174800-65176600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:65174800-65176800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr14:65174800-65177000	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr14:65175000-65176600	Enhancers	Primary B cells from peripheral blood	blood
22	chr14:65175000-65176800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr14:65175000-65177000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr14:65175000-65178000	Enhancers	Left Ventricle	heart
25	chr14:65175200-65178600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:65175200-65181000	Weak transcription	Hela-S3	cervix
27	chr14:65175200-65181800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:65175400-65177000	Genic enhancers	Fetal Intestine Small	intestine
29	chr14:65175400-65177200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr14:65175600-65176800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr14:65175600-65176800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:65175600-65176800	Enhancers	Right Ventricle	heart
33	chr14:65175800-65176800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr14:65175800-65176800	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr14:65175800-65177000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:65175800-65177000	Enhancers	H9 Cell Line	embryonic stem cell
37	chr14:65175800-65177000	Genic enhancers	Fetal Intestine Large	intestine
38	chr14:65175800-65177600	Genic enhancers	A549	lung
39	chr14:65175800-65177800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:65175800-65178200	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr14:65176000-65176600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr14:65176000-65176600	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr14:65176000-65176800	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr14:65176000-65177000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:65176000-65177000	Genic enhancers	HMEC	breast
46	chr14:65176000-65177200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr14:65176000-65177400	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr14:65176000-65177600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:65176000-65177800	Enhancers	Placenta	Placenta
50	chr14:65176000-65178000	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links