Variant report

Variant	rs12887344
Chromosome Location	chr14:81745152-81745153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81687510..81689760-chr14:81742676..81747496,4	MCF-7	breast:
2	chr14:81740817..81743318-chr14:81743948..81746611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000140022	Chromatin interaction

rs_ID	r²[population]
rs17631987	0.88[CHD][hapmap];0.89[JPT][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs12887344	NRXN3	cis	parietal	SCAN

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial
3	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
4	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
5	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:81735800-81746400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:81736000-81746000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:81736400-81746600	Weak transcription	Liver	Liver
9	chr14:81737600-81748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:81740800-81745200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:81742600-81745200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:81742600-81746800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:81742600-81747800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:81742600-81748200	Weak transcription	Fetal Brain Female	brain
16	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
17	chr14:81742800-81745200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:81743000-81746800	Weak transcription	Brain Germinal Matrix	brain
19	chr14:81743200-81750200	Weak transcription	Brain Substantia Nigra	brain
20	chr14:81743600-81745200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:81743600-81751200	Weak transcription	Brain Anterior Caudate	brain
22	chr14:81743800-81745200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:81743800-81745400	Weak transcription	Lung	lung
24	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
25	chr14:81744000-81745200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:81744000-81755800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr14:81744200-81745200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:81744200-81745400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:81744200-81745600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr14:81744400-81745200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:81744400-81745200	Strong transcription	NHEK	skin
32	chr14:81744400-81745400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:81744400-81746200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:81744400-81747000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:81744400-81758600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:81744400-81759200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:81744600-81747600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:81744600-81747600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:81744600-81747800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:81744600-81748400	Weak transcription	Gastric	stomach
41	chr14:81744800-81745200	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr14:81744800-81746400	Weak transcription	Fetal Stomach	stomach
43	chr14:81744800-81746800	Weak transcription	Fetal Intestine Large	intestine
44	chr14:81744800-81746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr14:81744800-81747200	Weak transcription	Esophagus	oesophagus
46	chr14:81744800-81751000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr14:81744800-81751200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr14:81744800-81752800	Weak transcription	HMEC	breast
49	chr14:81744800-81753800	Weak transcription	Placenta	Placenta
50	chr14:81744800-81756800	Weak transcription	K562	blood

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