Variant report

Variant	rs17631987
Chromosome Location	chr14:81756495-81756496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81684202..81687354-chr14:81754240..81756852,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12887344	0.88[CHD][hapmap];0.89[JPT][hapmap]
rs17550150	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3109610	0.87[CEU][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes]
rs7144916	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs17631987	SCG5	trans	cerebellum	SCAN
rs17631987	NRXN3	cis	parietal	SCAN
rs17631987	TBC1D30	trans	lymphoblastoid	seeQTL
rs17631987	GBP6	trans	lymphoblastoid	seeQTL
rs17631987	RAI14	trans	lymphoblastoid	seeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
4	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
5	chr14:81744400-81758600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:81744400-81759200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:81744800-81756800	Weak transcription	K562	blood
8	chr14:81745000-81769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:81745200-81758600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr14:81749800-81762400	Weak transcription	HSMMtube	muscle
11	chr14:81749800-81771400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:81752800-81757200	Strong transcription	HMEC	breast
13	chr14:81754200-81757200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:81754400-81757400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:81754400-81777800	Weak transcription	Ovary	ovary
16	chr14:81755000-81769000	Weak transcription	Pancreas	Pancrea
17	chr14:81755200-81756600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:81755200-81756600	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr14:81755400-81756800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:81755400-81757200	Strong transcription	NHEK	skin
21	chr14:81755400-81757600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:81755800-81757000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:81756000-81757200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:81756400-81757000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:81756400-81760200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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