Variant report

Variant	rs17550150
Chromosome Location	chr14:81761895-81761896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81685773..81688318-chr14:81761111..81762660,2	K562	blood:
2	chr14:81760876..81762571-chr14:81768597..81770537,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17631987	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3109610	0.87[CEU][hapmap];0.83[AMR][1000 genomes]
rs7144916	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
3	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
4	chr14:81745000-81769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:81749800-81762400	Weak transcription	HSMMtube	muscle
6	chr14:81749800-81771400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:81754400-81777800	Weak transcription	Ovary	ovary
8	chr14:81755000-81769000	Weak transcription	Pancreas	Pancrea
9	chr14:81756600-81777400	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:81757200-81762800	Weak transcription	HMEC	breast
11	chr14:81757600-81762000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:81757800-81768400	Weak transcription	K562	blood
13	chr14:81758200-81765000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:81758600-81762400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:81759400-81762400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:81759400-81773000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:81760200-81762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:81760200-81766400	Weak transcription	Fetal Intestine Small	intestine
19	chr14:81760200-81768400	Weak transcription	Placenta	Placenta
20	chr14:81760400-81762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:81760600-81767600	Weak transcription	Brain Anterior Caudate	brain
22	chr14:81760800-81762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:81761000-81767800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr14:81761400-81762400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:81761800-81762600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr14:81761800-81763200	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr14:81761800-81763400	Strong transcription	NHEK	skin
28	chr14:81761800-81763800	Enhancers	Primary monocytes fromperipheralblood	blood

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