Variant report

Variant	rs12892902
Chromosome Location	chr14:80913745-80913746
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10151034	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10483951	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12436273	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12895468	0.82[AMR][1000 genomes]
rs34806974	0.84[AMR][1000 genomes]
rs4903915	0.83[AMR][1000 genomes]
rs6574573	0.82[AMR][1000 genomes]
rs6574574	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6574575	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8013875	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv15289	chr14:80900600-80939903	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv974289	chr14:80911851-80915626	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80905800-80916800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:80912200-80914400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:80912400-80913800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:80913400-80914000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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