Variant report

Variant	rs12895468
Chromosome Location	chr14:80956169-80956170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483951	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12436273	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12891534	0.85[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap]
rs12892902	0.82[AMR][1000 genomes]
rs12894810	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12897856	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17528984	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34806974	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35334352	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4415953	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4899768	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4899769	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903915	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6574574	0.82[AMR][1000 genomes]
rs6574575	0.82[AMR][1000 genomes]
rs7143355	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7145557	0.80[AMR][1000 genomes]
rs7145603	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8005349	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8013875	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs935728	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
3	chr14:80941800-80956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:80944200-80957600	Weak transcription	Fetal Thymus	thymus
5	chr14:80944600-80956800	Weak transcription	HSMM	muscle
6	chr14:80945000-80956800	Weak transcription	Dnd41	blood
7	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
8	chr14:80952400-80957400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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