Variant report

Variant	rs17528984
Chromosome Location	chr14:80949193-80949194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10483951	0.82[AMR][1000 genomes]
rs12436273	0.82[AMR][1000 genomes]
rs12891534	0.81[CHB][hapmap]
rs12894810	0.83[AMR][1000 genomes]
rs12895468	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12897856	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34806974	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35334352	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4415953	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4899768	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899769	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903915	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7143355	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7145557	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7145603	0.87[AMR][1000 genomes]
rs8005349	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013875	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs935728	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:80940400-80949200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
4	chr14:80941800-80956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:80944200-80949600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:80944200-80957600	Weak transcription	Fetal Thymus	thymus
7	chr14:80944600-80956800	Weak transcription	HSMM	muscle
8	chr14:80945000-80956800	Weak transcription	Dnd41	blood
9	chr14:80945400-80949600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr14:80948800-80949800	Strong transcription	Psoas Muscle	Psoas
11	chr14:80949000-80950200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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