Variant report

Variant	rs7143355
Chromosome Location	chr14:80957349-80957350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12895468	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12897856	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17528984	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34806974	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35334352	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4415953	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899768	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4899769	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4903915	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7145557	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7145603	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8005349	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8013875	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs935728	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
3	chr14:80944200-80957600	Weak transcription	Fetal Thymus	thymus
4	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
5	chr14:80952400-80957400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:80956800-80957800	Enhancers	Dnd41	blood
7	chr14:80956800-80958800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr14:80956800-80958800	Enhancers	HSMM	muscle
9	chr14:80957000-80957600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:80957200-80957600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:80957200-80957800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:80957200-80957800	Enhancers	HSMMtube	muscle
13	chr14:80957200-80958000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr14:80957200-80958000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr14:80957200-80958000	Enhancers	Brain Hippocampus Middle	brain
16	chr14:80957200-80958200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr14:80957200-80958600	Enhancers	Fetal Lung	lung
18	chr14:80957200-80960200	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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