Variant report

Variant	rs935728
Chromosome Location	chr14:80957923-80957924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12891534	0.81[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap]
rs12895468	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12897856	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17528984	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34806974	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35334352	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4415953	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4899768	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899769	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4903915	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7143355	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7145557	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7145603	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8005349	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8013875	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
3	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
4	chr14:80956800-80958800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr14:80956800-80958800	Enhancers	HSMM	muscle
6	chr14:80957200-80958000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:80957200-80958000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:80957200-80958000	Enhancers	Brain Hippocampus Middle	brain
9	chr14:80957200-80958200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:80957200-80958600	Enhancers	Fetal Lung	lung
11	chr14:80957200-80960200	Enhancers	Fetal Muscle Leg	muscle
12	chr14:80957400-80958000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:80957400-80958200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:80957400-80958200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:80957400-80958200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:80957400-80958200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:80957400-80958200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr14:80957400-80958200	Enhancers	Stomach Mucosa	stomach
19	chr14:80957400-80958400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:80957400-80958400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:80957400-80958400	Enhancers	Brain Cingulate Gyrus	brain
22	chr14:80957400-80958400	Enhancers	Brain Substantia Nigra	brain
23	chr14:80957600-80958000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr14:80957600-80958200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:80957600-80958200	Enhancers	Fetal Thymus	thymus
26	chr14:80957600-80958200	Enhancers	NHLF	lung
27	chr14:80957600-80958400	Enhancers	Small Intestine	intestine
28	chr14:80957800-80958000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:80957800-80958000	Flanking Active TSS	NHDF-Ad	bronchial
30	chr14:80957800-80958200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:80957800-80958200	Enhancers	Brain Anterior Caudate	brain
32	chr14:80957800-80958200	Flanking Active TSS	HSMMtube	muscle
33	chr14:80957800-80958200	Enhancers	Osteobl	bone
34	chr14:80957800-80958400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr14:80957800-80958800	Flanking Active TSS	Dnd41	blood

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