Variant report

Variant	rs12896428
Chromosome Location	chr14:69140074-69140075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69133832..69136343-chr14:69137612..69140820,3	K562	blood:
2	chr14:69139896..69142806-chr14:69144430..69145954,2	MCF-7	breast:
3	chr14:69131429..69134144-chr14:69139258..69141880,2	MCF-7	breast:
4	chr14:69125471..69127049-chr14:69139914..69141756,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12431919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436378	0.95[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1274761	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12887682	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12895574	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12898061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17756914	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34720143	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56273152	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573854	0.83[AFR][1000 genomes]
rs7147855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957258	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392590	chr14:69138099-69142797	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69129000-69140200	Enhancers	NHDF-Ad	bronchial
2	chr14:69129800-69140600	Enhancers	Colon Smooth Muscle	Colon
3	chr14:69131200-69140600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr14:69132400-69141400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:69133600-69140400	Enhancers	Pancreas	Pancrea
6	chr14:69133600-69141400	Weak transcription	HUVEC	blood vessel
7	chr14:69133800-69141400	Weak transcription	Aorta	Aorta
8	chr14:69136200-69141600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:69136200-69145800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:69136600-69141400	Weak transcription	HMEC	breast
11	chr14:69136600-69141600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:69136800-69150000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:69137200-69141800	Weak transcription	NH-A	brain
14	chr14:69137400-69141600	Weak transcription	Osteobl	bone
15	chr14:69137600-69140400	Enhancers	Liver	Liver
16	chr14:69137800-69141400	Weak transcription	HSMM	muscle
17	chr14:69137800-69141800	Weak transcription	Esophagus	oesophagus
18	chr14:69137800-69141800	Weak transcription	HSMMtube	muscle
19	chr14:69137800-69148400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:69138000-69141600	Weak transcription	Spleen	Spleen
21	chr14:69138200-69141800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr14:69138200-69144400	Weak transcription	Small Intestine	intestine
23	chr14:69138400-69141400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr14:69138400-69141400	Weak transcription	Placenta	Placenta
25	chr14:69138600-69147800	Weak transcription	Brain Anterior Caudate	brain
26	chr14:69138800-69140200	Weak transcription	Fetal Kidney	kidney
27	chr14:69138800-69147200	Weak transcription	Lung	lung
28	chr14:69139000-69140200	Enhancers	Stomach Mucosa	stomach
29	chr14:69139000-69140200	Enhancers	HepG2	liver
30	chr14:69139200-69141800	Weak transcription	Fetal Thymus	thymus
31	chr14:69139200-69142000	Enhancers	GM12878-XiMat	blood
32	chr14:69139200-69150000	Weak transcription	Thymus	Thymus
33	chr14:69139400-69140400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:69139400-69140400	Enhancers	Gastric	stomach
35	chr14:69139400-69140400	Enhancers	Ovary	ovary
36	chr14:69139600-69141400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:69139600-69141400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:69139600-69141600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr14:69139800-69140200	Weak transcription	Right Ventricle	heart
40	chr14:69139800-69141400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr14:69139800-69141400	Weak transcription	Fetal Intestine Small	intestine
42	chr14:69139800-69142000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:69139800-69142800	Weak transcription	Fetal Stomach	stomach
44	chr14:69139800-69143000	Weak transcription	Fetal Muscle Leg	muscle
45	chr14:69139800-69143000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr14:69139800-69143200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:69139800-69144200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr14:69139800-69144400	Weak transcription	Left Ventricle	heart
49	chr14:69139800-69144400	Weak transcription	Right Atrium	heart
50	chr14:69140000-69140200	Transcr. at gene 5' and 3'	Fetal Heart	heart

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