Variant report

Variant	rs17756914
Chromosome Location	chr14:69151346-69151347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69150326..69151907-chr14:69154699..69156604,2	MCF-7	breast:
2	chr14:69142992..69145635-chr14:69147389..69151397,3	MCF-7	breast:
3	chr14:69149566..69152941-chr14:69256310..69260478,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12431919	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12436378	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1274761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1274762	1.00[CHB][hapmap]
rs12887682	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12895574	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs12896428	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12898061	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34720143	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56273152	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7147855	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs957258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1329	chr14:69142476-69176987	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69141400-69153800	Enhancers	Fetal Intestine Large	intestine
2	chr14:69141400-69156800	Enhancers	Placenta	Placenta
3	chr14:69144800-69152400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:69145400-69152000	Weak transcription	Gastric	stomach
5	chr14:69145400-69152600	Enhancers	Fetal Kidney	kidney
6	chr14:69145600-69153200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:69146200-69152600	Enhancers	Fetal Lung	lung
8	chr14:69146200-69153000	Enhancers	Fetal Muscle Leg	muscle
9	chr14:69146200-69155400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:69146400-69152800	Enhancers	Adipose Nuclei	Adipose
11	chr14:69146400-69153200	Enhancers	NHDF-Ad	bronchial
12	chr14:69146600-69157400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:69146800-69151400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:69146800-69152800	Enhancers	Fetal Stomach	stomach
15	chr14:69147000-69152000	Enhancers	NHEK	skin
16	chr14:69147000-69153200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:69147000-69157400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:69147200-69151400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr14:69147200-69152200	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr14:69147200-69153000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:69147200-69153000	Enhancers	Stomach Smooth Muscle	stomach
22	chr14:69147200-69153200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:69147200-69153200	Enhancers	NHLF	lung
24	chr14:69147200-69153200	Enhancers	Osteobl	bone
25	chr14:69147200-69157600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:69147400-69153200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr14:69147400-69153400	Enhancers	Primary T cells fromperipheralblood	blood
28	chr14:69147400-69153400	Enhancers	Fetal Thymus	thymus
29	chr14:69147400-69153600	Enhancers	Primary hematopoietic stem cells	blood
30	chr14:69147400-69153600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr14:69147600-69151800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:69147600-69153000	Enhancers	Primary T cells from cord blood	blood
33	chr14:69147600-69153000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:69147600-69153200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:69147600-69153400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:69147800-69152600	Enhancers	Left Ventricle	heart
37	chr14:69147800-69153000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:69147800-69153200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr14:69147800-69153200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr14:69147800-69153200	Enhancers	NH-A	brain
41	chr14:69147800-69153400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr14:69147800-69153400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:69147800-69153600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:69148000-69151600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr14:69148000-69151600	Enhancers	Small Intestine	intestine
46	chr14:69148000-69151800	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr14:69148000-69153000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:69148000-69153000	Enhancers	HUVEC	blood vessel
49	chr14:69148000-69153200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr14:69148000-69153200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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